DRSC/TRiP Functional Genomics Resources

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Protein Alignment COL6A2 and col-84

DIOPT Version :10

Sequence 1:NP_001840.3 Gene:COL6A2 / 1292 HGNCID:2212 Length:1019 Species:Homo sapiens
Sequence 2:NP_496535.1 Gene:col-84 / 174824 WormBaseID:WBGene00000659 Length:333 Species:Caenorhabditis elegans


Alignment Length:297 Identity:109/297 - (36%)
Similarity:130/297 - (43%) Gaps:60/297 - (20%)


- Green bases have known domain annotations that are detailed below.


Human   262 GY-RGQKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPKGVPGFKGE-KGEFGADGRKGAPGLA 324
            || .|...|.||.|....||..... |.|.:.|.| |.|.|     |. :.:..|:.:..|    
 Worm    75 GYSEGGYAASGNTGGSYHPGAAPAH-DFGAQAPAG-PAPTG-----GSCQCQSAAENKCHA---- 128

Human   325 GKNGTDGQKGKLGRIGPPGCKGDPGNRGPDGYPGEAGSPG--------ERGDQG-----GKGDPG 376
                           ||||.||.||:.||:|.||..|.||        |..|.|     ..|.||
 Worm   129 ---------------GPPGPKGSPGSPGPNGVPGVDGKPGHDSLDVTPEPQDTGLCYYCPGGPPG 178

Human   377 RPGRRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSP--GSDG 439
            .||..|.||..|.||:.|..|.:|..|:||..|..|.|||:|.:|..||:|:.|..|..  |..|
 Worm   179 APGPNGRPGLRGMKGADGGLGRTGHDGNPGHPGEMGAPGPQGKQGPDGRQGEKGADGRKPIGRPG 243

Human   440 PKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQP 504
            |||::|..|.:||      ||:.|..|..|..||.||||..|.||::|..|.|         |..
 Worm   244 PKGQRGPQGEQGP------VGDNGRNGPVGGAGPAGPQGGSGGPGEKGLDGGP---------GSE 293

Human   505 GPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGD 541
            |..|.||:.....|.|  |....|..|.||..||.||
 Worm   294 GKVGRPGKDAEYCPCP--ARESHGGTGGRGGSGGAGD 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
COL6A2NP_001840.3 Nonhelical region 21..256
vWA_collagen_alpha_1-VI-type 43..231 CDD:238757
gly_rich_SclB <255..>513 CDD:468478 98/267 (37%)
Triple-helical region 257..590 109/297 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..588 109/297 (37%)
Cell attachment site. /evidence=ECO:0000255 366..368 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 426..428 0/1 (0%)
Collagen 487..556 CDD:460189 19/55 (35%)
Cell attachment site. /evidence=ECO:0000255 489..491 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 498..500 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 539..541 0/1 (0%)
Nonhelical region 591..1019
vWA_collagen_alpha_1-VI-type 612..803 CDD:238757
VWA 833..1007 CDD:459670
col-84NP_496535.1 Col_cuticle_N 5..57 CDD:198156
gly_rich_SclB <189..>302 CDD:468478 52/127 (41%)
Blue background indicates that the domain is not in the aligned region.

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