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Protein Alignment COL6A2 and bli-1

DIOPT Version :10

Sequence 1:	NP_001840.3	Gene:	COL6A2 / 1292	HGNCID:	2212	Length:	1019	Species:	Homo sapiens
Sequence 2:	NP_496311.2	Gene:	bli-1 / 174653	WormBaseID:	WBGene00000251	Length:	948	Species:	Caenorhabditis elegans

Alignment Length:	400	Identity:	130/400 - (32%)
Similarity:	154/400 - (38%)	Gaps:	111/400 - (27%)

- Green bases have known domain annotations that are detailed below.

Human   255 PGPSGPKGYRGQKGAKGNMGEPG------EPGQKGRQGDP-------------GIEGPIGFPGPK 300
            |....|.|.||        ..||      .||.:.| |:|             |..||.|.|||
Worm   333 PSAQYPTGKRG--------SHPGFGPQRPRPGTRPR-GNPCDQCSAQPNHCPSGPPGPRGRPGP- 387

Human   301 GVPGFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGPP--GCK----GDPGNRGPDGYPGE 359
              |||.|:      ||.:|..||.|     |..|.......|  ||.    |.||.|||||.||.
Worm   388 --PGFPGQ------DGPRGLRGLNG-----GYSGVQPSSYDPVIGCVQCPIGPPGERGPDGTPGV 439

Human   360 AGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKGGPGPR-----GP 419
            .|..|..|:||..|..|:|         ||.|:.||.|.:|:||:||..|..|..|..     ||
Worm   440 PGEDGIDGEQGVNGQDGQP---------GAPGAPGYHGMNGSPGTPGKPGLPGRNGQSCKSIPGP 495

Human   420 KGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPG 484
            .|:||..|.||..|.||:||..|:.|.||.:||      .|..|..|..|.||...| ||.|..|
Worm   496 PGQPGVMGVPGRDGDPGTDGEHGQDGSPGIQGP------PGRDGTSGPDGQPGVSAP-GAPGTDG 553

Human   485 ------KQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKG-EPGPRGP-EGGRGD 541
                  |:.|:.|..||           ..|..:.|.....|||...|:. ||.||.. .....|
Worm   554 GYCPCPKRSSKFDFNDA-----------YNDDEKRGLEEHRPRGYDSERAEEPRPRQTVRTNTYD 607

Human   542 FGLKGEPGRKGEKGEPADPGPP-----------GEPGPRGP----RGVPG---PEGE-----PGP 583
            .....|..|:......|:..||           .||.|:.|    |..|.   ||.:     |.|
Worm   608 ENSGAEHQRRPNYEPSAEVAPPRQDRYEDEERVREPPPKRPPPPHRQTPHELYPEEQPYVRRPPP 672

Human   584 PGDPGLTECD 593
            |.:.|..|.:
Worm   673 PQNRGNYEVE 682

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.