| Sequence 1: | NP_001840.3 | Gene: | COL6A2 / 1292 | HGNCID: | 2212 | Length: | 1019 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_496310.1 | Gene: | col-80 / 174652 | WormBaseID: | WBGene00000656 | Length: | 317 | Species: | Caenorhabditis elegans |
| Alignment Length: | 260 | Identity: | 97/260 - (37%) |
|---|---|---|---|
| Similarity: | 111/260 - (42%) | Gaps: | 67/260 - (25%) |
- Green bases have known domain annotations that are detailed below.
|
Human 409 GAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPG---------------PEGPRGLAGE 458
Human 459 VGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQP---GPKGDPGRPGFSYPGP 520
Human 521 RGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPPG 585
Human 586 DPGLTECDVMTYVRETCGCCDCEKRCGALDVVFVIDSSESIGYTNFTLEKNFVINVVNRLGAIAK 650
Human 651 650 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| COL6A2 | NP_001840.3 | Nonhelical region | 21..256 | ||
| vWA_collagen_alpha_1-VI-type | 43..231 | CDD:238757 | |||
| gly_rich_SclB | <255..>513 | CDD:468478 | 47/121 (39%) | ||
| Triple-helical region | 257..590 | 83/198 (42%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 257..588 | 82/196 (42%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 366..368 | ||||
| Cell attachment site. /evidence=ECO:0000255 | 426..428 | 0/1 (0%) | |||
| Collagen | 487..556 | CDD:460189 | 32/71 (45%) | ||
| Cell attachment site. /evidence=ECO:0000255 | 489..491 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 498..500 | 0/1 (0%) | |||
| Cell attachment site. /evidence=ECO:0000255 | 539..541 | 0/1 (0%) | |||
| Nonhelical region | 591..1019 | 14/60 (23%) | |||
| vWA_collagen_alpha_1-VI-type | 612..803 | CDD:238757 | 10/39 (26%) | ||
| VWA | 833..1007 | CDD:459670 | |||
| col-80 | NP_496310.1 | Col_cuticle_N | 4..56 | CDD:198156 | |
| gly_rich_SclB | <101..>264 | CDD:468478 | 76/183 (42%) | ||
| Blue background indicates that the domain is not in the aligned region. | |||||