DRSC/TRiP Functional Genomics Resources

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Protein Alignment COL6A2 and col-72

DIOPT Version :10

Sequence 1:NP_001840.3 Gene:COL6A2 / 1292 HGNCID:2212 Length:1019 Species:Homo sapiens
Sequence 2:NP_001368019.1 Gene:col-72 / 173698 WormBaseID:WBGene00000648 Length:288 Species:Caenorhabditis elegans


Alignment Length:322 Identity:112/322 - (34%)
Similarity:137/322 - (42%) Gaps:69/322 - (21%)


- Green bases have known domain annotations that are detailed below.


Human   204 IASTPHELYRNDYATMLPDSTEIDQDTINRIIKVMKHEAYGECYKVSCLEIPGPSGPKGYRGQKG 268
            :|..|:.|:|.:..|:   |.::..|.    ..|::.||..:..::.          ..|...:.
 Worm    24 MAYIPYMLHRMEAITI---SLKVHNDE----FLVLETEARSQLGELR----------SDYPRVRR 71

Human   269 AKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPKGVPGFKGEKGEFGADGRKGAPGLAGKN-GTDGQ 332
            |.....:.||....|:...||        |.||.||..||.|..|..|:.|.||:.|.. .||.|
 Worm    72 ATNRKRQAGECQCGGQNVCPG--------GTKGQPGRNGEDGTPGQPGQPGEPGITGMTPPTDYQ 128

Human   333 KGKLGRIGPPGCKGDPGNRGPDGYPGEAGSPGERGDQGGKGDPGRPGRRGPPGEIGAKGSKGYQG 397
            ..|..|..|||.:|.||..||.|.||..|.||    |.|.|  ||||..||.|:.|..|.:|..|
 Worm   129 NEKSCRQCPPGPRGQPGYGGPPGPPGLPGQPG----QNGNG--GRPGNNGPMGQPGEPGREGQPG 187

Human   398 NSGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPEGPRGLAGEVGNK 462
            .:|.||||                     |..|.:||.||.|.||..|.||..||.|.||..|| 
 Worm   188 KAGGPGSP---------------------GRDGIRGSKGSTGDKGPNGPPGQNGPPGWAGRDGN- 230

Human   463 GAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPG-RPGFSYPGPRGA 523
                    .||:|..|..||||..|:.|.||.|      |.|||.|.|| ..|:.....|||
 Worm   231 --------IGPQGTPGGRGEPGGPGTDGFPGFA------GNPGPDGAPGVDSGYCKCPSRGA 278

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
COL6A2NP_001840.3 Nonhelical region 21..256 10/51 (20%)
vWA_collagen_alpha_1-VI-type 43..231 CDD:238757 7/26 (27%)
gly_rich_SclB <255..>513 CDD:468478 98/259 (38%)
Triple-helical region 257..590 102/269 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..588 102/269 (38%)
Cell attachment site. /evidence=ECO:0000255 366..368 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 426..428 0/1 (0%)
Collagen 487..556 CDD:460189 16/38 (42%)
Cell attachment site. /evidence=ECO:0000255 489..491 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 498..500 0/1 (0%)
Cell attachment site. /evidence=ECO:0000255 539..541
Nonhelical region 591..1019
vWA_collagen_alpha_1-VI-type 612..803 CDD:238757
VWA 833..1007 CDD:459670
col-72NP_001368019.1 gly_rich_SclB <91..>267 CDD:468478 93/225 (41%)
Blue background indicates that the domain is not in the aligned region.

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