DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AgaP_AGAP002028 and rnf13

DIOPT Version :9

Sequence 1:XP_321026.4 Gene:AgaP_AGAP002028 / 1281089 VectorBaseID:AGAP002028 Length:615 Species:Anopheles gambiae
Sequence 2:NP_957338.1 Gene:rnf13 / 793981 ZFINID:ZDB-GENE-040426-772 Length:377 Species:Danio rerio


Alignment Length:322 Identity:138/322 - (42%)
Similarity:194/322 - (60%) Gaps:23/322 - (7%)


- Green bases have known domain annotations that are detailed below.


Mosquito    39 VMLVAMVLMLAQPCVRADILVYQMLNDQIIEEFRDLPATFGGEIPDSGLKVLADRADPPDGCTEM 103
            |.:.|.:.:|.   |.|||..|..  |...|.|.||||.||..:|..|||.....|.|.:.|..:
Zfish    21 VQIFAFLNLLP---VEADISAYSF--DNKTENFDDLPARFGYRLPSEGLKGFLIGARPENACVPI 80

Mosquito   104 RPAP---NITSKFAVVIARYNCSFEVKVRNAQQAGYAMVIVHNVGSNDLEHMSANHPQDLL---- 161
            .|.|   |::|.|.|:|.|::|:|::||.:||:|||...|||||.|:||..| .:...|:|    
Zfish    81 EPPPQRENLSSAFIVLIRRFDCNFDIKVLHAQKAGYKAAIVHNVDSDDLISM-GSEDLDILKQID 144

Mosquito   162 IPSVFVGESAGRSIIEAYLYDHDYALVITDDIPFNISNNLIIPFAIVVGLCFIIMVLFMIIRCIR 226
            |||||:||.|..|:.|.|:|:....:::..|....:...| |||.|:||:|.|::|:|||.:.::
Zfish   145 IPSVFIGEEAANSLKEDYIYEKGGHVILMPDFSLPLEYYL-IPFLIIVGICLILIVVFMITKFVQ 208

Mosquito   227 ERRRRMRHRLPARVLRKIGIVKFAKGMRFDTCAICLEDFVENERLRVLPCRHAYHAICIDPWLTK 291
            :|.|..|.||....|:|:.|.||.||..:|.|||||:::.|.||||||||.||||..|:||||||
Zfish   209 DRHRARRSRLRKDQLKKLPIHKFKKGDSYDVCAICLDEYEEGERLRVLPCSHAYHCKCVDPWLTK 273

Mosquito   292 NRRVCPICKRRVIVR-GEARQRRYSSDSMSSTNAD----ESTPLLNSTENSTSGSAAGVVTA 348
            .::.||:||::|:.. |::..   .|||:.|...|    |:||||.|.. |||..:.|.::|
Zfish   274 TKKTCPVCKQKVVPSDGDSES---DSDSVDSGGEDNEVSENTPLLRSLA-STSAHSFGSMSA 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AgaP_AGAP002028XP_321026.4 PA_C_RZF_like 51..197 CDD:239038 62/152 (41%)
zf-RING_2 256..300 CDD:290367 28/43 (65%)
rnf13NP_957338.1 PA_C_RZF_like 23..180 CDD:239038 64/162 (40%)
zf-RING_2 238..282 CDD:290367 28/43 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 79 1.000 Domainoid score I8878
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H13493
Inparanoid 1 1.050 219 1.000 Inparanoid score I3662
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1487241at2759
OrthoFinder 1 1.000 - - FOG0001489
OrthoInspector 1 1.000 - - otm39161
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X670
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.970

Return to query results.
Submit another query.