DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG43089 and skr-15

DIOPT Version :10

Sequence 1:NP_001246606.1 Gene:CG43089 / 12798588 FlyBaseID:FBgn0262535 Length:144 Species:Drosophila melanogaster
Sequence 2:NP_494662.1 Gene:skr-15 / 173729 WormBaseID:WBGene00004821 Length:184 Species:Caenorhabditis elegans


Alignment Length:136 Identity:26/136 - (19%)
Similarity:57/136 - (41%) Gaps:17/136 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LQTNDGVIHTVDMRFALQICPVRNMIMQERQKNLHTDDVIPLP--RVDAKNLRFIIKWW------ 67
            :::||.|:..:..:...|...:.|.|........:.:.::|:|  :|:.|.|:.:::|.      
 Worm    23 IESNDRVVLKISEQAIKQSATLSNSITNLGYSAENAESMVPIPIEKVNGKTLKLVVEWCEHHKAD 87

  Fly    68 --TSVQNLDENLLTMGKRKLKQLLTAEHANHQFLLQIILAADYLQMEKFLLISTHLMADALNECE 130
              .........:|.:..||...:      .|..|..::.|:::|::...|......:| .|.:..
 Worm    88 PVPEAYPSGNTVLPVWDRKFVDI------EHDALTDLVNASNFLEVMTLLTYCCKFIA-GLAKGM 145

  Fly   131 SVEEIR 136
            |.||:|
 Worm   146 SPEEMR 151

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG43089NP_001246606.1 BTB_POZ 9..115 CDD:453885 19/113 (17%)
skr-15NP_494662.1 BTB_POZ_SKP1 20..139 CDD:349631 20/121 (17%)
Skp1 130..175 CDD:460222 7/23 (30%)

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