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Protein Alignment CG43110 and Tmprss4

DIOPT Version :10

Sequence 1:	NP_001246396.1	Gene:	CG43110 / 12798330	FlyBaseID:	FBgn0262570	Length:	483	Species:	Drosophila melanogaster
Sequence 2:	XP_038937788.1	Gene:	Tmprss4 / 367074	RGDID:	1305033	Length:	478	Species:	Rattus norvegicus

Alignment Length:	251	Identity:	83/251 - (33%)
Similarity:	120/251 - (47%)	Gaps:	27/251 - (10%)

- Green bases have known domain annotations that are detailed below.

  Fly    28 CGKT-PVPKIISGSNASQQSAQYMAGI-FNTTHLLCGGTIIHEDFVLTVAHC----KSTQTLFVR 86
            |||: ...:::.|..||..|..:...| :|..| :|||:|:...::||.|||    ....:..||
  Rat   237 CGKSLKTTRVVGGVEASADSWPWQVSIQYNKQH-VCGGSILDHHWILTAAHCFRKYLDVSSWKVR 300

  Fly    87 LGAYNI-NHPTDQIRVIETIAHPQYSNSTYANDIALVKLERSVIFNLNIQPICIHL-DATLGKQI 149
            .|:..: |.|:..:..| .||.|. .......|||||||:..:.|:.:::|||:.. |..|...:
  Rat   301 AGSNKLGNSPSLPVAKI-FIAEPN-PLQPKEKDIALVKLKMPLTFSGSVRPICLPFSDEELIPTM 363

  Fly   150 RYYNAFGWGRT--RNAEQSDILQRIFVNRTNPMICH---LYLGMSPDPKQICATTDQG--DTCAG 207
            ..: ..|||.|  ...:.||.|.:..|...:...|:   .|.| ......:||.|.||  |||.|
  Rat   364 PVW-VIGWGFTEENGGKMSDTLLQASVQVIDSARCNAEDAYQG-EVTAGMLCAGTPQGGKDTCQG 426

  Fly   208 DSGGPLISKITYQGKNFDTQFGITS--YGTRECNGVGLYTDVSQYSGWIANIVRSK 261
            ||||||:    |....:.. .||.|  ||....:..|:||.|:.|..||.|:.||:
  Rat   427 DSGGPLM----YHYDKWQV-VGIVSWGYGCGSPSTPGVYTKVTAYLDWIYNVRRSE 477

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.