DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP1Lcsd and cbx5

DIOPT Version :9

Sequence 1:NP_001246478.1 Gene:HP1Lcsd / 12798145 FlyBaseID:FBgn0263084 Length:83 Species:Drosophila melanogaster
Sequence 2:NP_001073653.1 Gene:cbx5 / 563396 ZFINID:ZDB-GENE-030131-5553 Length:204 Species:Danio rerio


Alignment Length:75 Identity:27/75 - (36%)
Similarity:43/75 - (57%) Gaps:5/75 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 FVRGRMVEKIVYVFTTANKNTMFLIKFKDSPVVEVVPGIEANRRIPQMVIEFYMDHLSLPPPESR 70
            |.||...|||:.. |.:..:.|||:|:|||...::|...|||.:.||:||.||.:.|:.    ..
Zfish   133 FERGLEPEKIIGA-TDSCGDLMFLMKWKDSDEADLVLAKEANHKCPQIVIAFYEERLTW----HE 192

  Fly    71 KGNPRKRKAS 80
            .|:.:::.|:
Zfish   193 DGDKKEKSAT 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1LcsdNP_001246478.1 Chromo_shadow 12..63 CDD:279701 21/50 (42%)
cbx5NP_001073653.1 Chromo 21..69 CDD:306815
Chromo_shadow 138..190 CDD:307518 22/52 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000191
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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