DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP1Lcsd and cbx5

DIOPT Version :10

Sequence 1:NP_001246478.1 Gene:HP1Lcsd / 12798145 FlyBaseID:FBgn0263084 Length:83 Species:Drosophila melanogaster
Sequence 2:NP_001073653.1 Gene:cbx5 / 563396 ZFINID:ZDB-GENE-030131-5553 Length:204 Species:Danio rerio


Alignment Length:75 Identity:27/75 - (36%)
Similarity:43/75 - (57%) Gaps:5/75 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 FVRGRMVEKIVYVFTTANKNTMFLIKFKDSPVVEVVPGIEANRRIPQMVIEFYMDHLSLPPPESR 70
            |.||...|||:.. |.:..:.|||:|:|||...::|...|||.:.||:||.||.:.|:.    ..
Zfish   133 FERGLEPEKIIGA-TDSCGDLMFLMKWKDSDEADLVLAKEANHKCPQIVIAFYEERLTW----HE 192

  Fly    71 KGNPRKRKAS 80
            .|:.:::.|:
Zfish   193 DGDKKEKSAT 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1LcsdNP_001246478.1 CSD 10..62 CDD:349275 21/51 (41%)
cbx5NP_001073653.1 CD_HP1alpha_Cbx5 20..69 CDD:349298
CSD_HP1alpha_Cbx5 132..189 CDD:349302 24/56 (43%)
Blue background indicates that the domain is not in the aligned region.

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