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Protein Alignment HP1Lcsd and HP1c
DIOPT Version :10
| Sequence 1: | NP_001246478.1 |
Gene: | HP1Lcsd / 12798145 |
FlyBaseID: | FBgn0263084 |
Length: | 83 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_651093.1 |
Gene: | HP1c / 42696 |
FlyBaseID: | FBgn0039019 |
Length: | 237 |
Species: | Drosophila melanogaster |
| Alignment Length: | 77 |
Identity: | 17/77 - (22%) |
| Similarity: | 37/77 - (48%) |
Gaps: | 11/77 - (14%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 6 FVRGRMVEKIVYVFTTANKNTMFLIKFKDSPVVEVVPGIEANRRIPQMVIEF------YMDHLSL 64
:.||..:.:||.. |....:..:|::::.....::||..:...:.|||:|:: |..|:::
Fly 81 YERGLELAEIVGA-TDVTGDIKYLVRWQFCDEFDLVPSAQIVEKDPQMLIDYFQKMAPYSRHIAM 144
Fly 65 PPPESRKGNPRK 76
..||.|.:
Fly 145 ----RMKGVPEE 152
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| HP1Lcsd | NP_001246478.1 |
CSD |
10..62 |
CDD:349275 |
11/57 (19%) |
| HP1c | NP_651093.1 |
CD_CSD |
8..55 |
CDD:475127 |
|
| CSD |
85..135 |
CDD:349275 |
10/50 (20%) |
|
Blue background indicates that the domain is not in
the aligned region.
|
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