DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP1Lcsd and HP6

DIOPT Version :9

Sequence 1:NP_001246478.1 Gene:HP1Lcsd / 12798145 FlyBaseID:FBgn0263084 Length:83 Species:Drosophila melanogaster
Sequence 2:NP_608842.1 Gene:HP6 / 33661 FlyBaseID:FBgn0031613 Length:106 Species:Drosophila melanogaster


Alignment Length:63 Identity:20/63 - (31%)
Similarity:30/63 - (47%) Gaps:11/63 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 FLIKFKDSPVVEVVPGIEANRRIPQMVIEFYMDHLSLPPP------ESRKG-----NPRKRKA 79
            ||:::|......:||....|.|.|||||.||.:.:.....      ||..|     :|||:::
  Fly    41 FLMQWKGCDEAGLVPAEVLNVRCPQMVISFYEERIVFTDEGDEEDLESDNGYETTPSPRKKRS 103

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1LcsdNP_001246478.1 Chromo_shadow 12..63 CDD:279701 14/34 (41%)
HP6NP_608842.1 Chromo_shadow 25..76 CDD:279701 14/34 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000191
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.910

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