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Protein Alignment HP1Lcsd and hpl-2
DIOPT Version :10
| Sequence 1: | NP_001246478.1 |
Gene: | HP1Lcsd / 12798145 |
FlyBaseID: | FBgn0263084 |
Length: | 83 |
Species: | Drosophila melanogaster |
| Sequence 2: | NP_001022654.1 |
Gene: | hpl-2 / 176506 |
WormBaseID: | WBGene00001996 |
Length: | 303 |
Species: | Caenorhabditis elegans |
| Alignment Length: | 72 |
Identity: | 20/72 - (27%) |
| Similarity: | 33/72 - (45%) |
Gaps: | 1/72 - (1%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 11 MVEKIVYVFTTANKNTMFLIKFKDSPVVEVVPGIEANRRIPQMVIEFYMDHLSLPPPESRKGNPR 75
||||::...|.......|||:::..|..:.......|.:..:|:.||..:......| .||.:.:
Worm 20 MVEKVLDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEFEREFSKREKP-IRKRHSQ 83
Fly 76 KRKASED 82
|.:.|||
Worm 84 KPEPSED 90
|
Known Domains:
Indicated by green bases in alignment.
| Gene | Sequence | Domain | Region |
External ID | Identity |
| HP1Lcsd | NP_001246478.1 |
CSD |
10..62 |
CDD:349275 |
13/50 (26%) |
| hpl-2 | NP_001022654.1 |
CD_HP1_like |
18..68 |
CDD:349316 |
13/47 (28%) |
| CD_CSD |
109..>153 |
CDD:475127 |
|
|
Blue background indicates that the domain is not in
the aligned region.
|
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