DRSC/TRiP Functional Genomics Resources

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Protein Alignment HP1Lcsd and Cbx5

DIOPT Version :9

Sequence 1:NP_001246478.1 Gene:HP1Lcsd / 12798145 FlyBaseID:FBgn0263084 Length:83 Species:Drosophila melanogaster
Sequence 2:NP_001070257.1 Gene:Cbx5 / 12419 MGIID:109372 Length:191 Species:Mus musculus


Alignment Length:75 Identity:29/75 - (38%)
Similarity:42/75 - (56%) Gaps:3/75 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 FVRGRMVEKIVYVFTTANKNTMFLIKFKDSPVVEVVPGIEANRRIPQMVIEFYMDHLSLPP-PES 69
            |.||...|||:.. |.:..:.|||:|:||:...::|...|||.:.||:||.||.:.|:... ||.
Mouse   117 FERGLEPEKIIGA-TDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180

  Fly    70 RKGNPRKRKA 79
            .: |..|..|
Mouse   181 AE-NKEKESA 189

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HP1LcsdNP_001246478.1 Chromo_shadow 12..63 CDD:279701 20/50 (40%)
Cbx5NP_001070257.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
CD_HP1alpha_Cbx5 19..68 CDD:349298
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 70..117 29/75 (39%)
CSD_HP1alpha_Cbx5 116..173 CDD:349302 23/56 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000191
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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