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Protein Alignment Chil1 and Idgf6

DIOPT Version :9

Sequence 1:	NP_031721.2	Gene:	Chil1 / 12654	MGIID:	1340899	Length:	389	Species:	Mus musculus
Sequence 2:	NP_001286499.1	Gene:	Idgf6 / 36868	FlyBaseID:	FBgn0013763	Length:	452	Species:	Drosophila melanogaster

Alignment Length:	458	Identity:	122/458 - (26%)
Similarity:	208/458 - (45%)	Gaps:	111/458 - (24%)

- Green bases have known domain annotations that are detailed below.

Mouse    20 VLMLLQSCSAYK----------LVCYFTSWSQYREGVGSFLPDAIQPFL--CTHIIYSFANISSD 72
            |.:.|.|..|.|          ||||:.|.|..:||:|..:.|.::|.|  |.:::|.:|.|..|
  Fly     9 VSLCLASIQASKVGAPQLPKKHLVCYYDSASFVKEGLGKLVIDELEPALQFCDYLVYGYAGIERD 73

Mouse    73 NMLSTWEWNDESN-------YDKLNKLKTRNTNLKTLLSVGGWKFGE---------KRFSEIASN 121
            :..:. ..|.:.:       |..:.:||.:..|:|.||||||.|..|         .::.|:..:
  Fly    74 SHKAV-SLNQQLDLDLGKGLYRTVTRLKRKYPNVKILLSVGGDKDIELDKDAKELPNKYLELLES 137

Mouse   122 TERRTAFVRSVAPFLRSYGFDGLDLAWLYPRLR-------------------------------D 155
            ...||.||.:|...:::|||||||:||.:|:.:                               .
  Fly   138 PTGRTRFVNTVYSLVKTYGFDGLDVAWQFPKNKPKKVHSGIGSLWKGFKKVFSGDSIVDEKSEEH 202

Mouse   156 KQYFSTLIKELNAEFTKEVQPGREKLLLSAALSAGKVAIDTGYDIAQIAQHLDFINLMTYDFHGV 220
            |:.|:.|::::...|    :|  :.||||..: ...|.....|||..:..:|||:||.|:||...
  Fly   203 KEQFTALLRDVKNAF----RP--DNLLLSTTV-LPNVNSSLFYDIPAVVNYLDFVNLGTFDFFTP 260

Mouse   221 WR--QITGHHSPLFQ-GQKDTRFDRYSNVNYAVQYMIRLGAQASKLLMGIPTFGKSFTLASSENQ 282
            .|  ::..:.:|::: .:::..|    ||...|:|.:|....|||:.:|:.|:|:.:.|......
  Fly   261 QRNPEVADYAAPIYELSERNPEF----NVAAQVKYWLRNNCPASKINVGVATYGRPWKLTDDSGD 321

Mouse   283 LGAP----ISGEGLPGRFTKEAGTLAYYEIC--------DFLKGAE----------------VHR 319
            .|.|    :..|...|..|:..|..::.|:|        .:||||.                .:|
  Fly   322 TGVPPVKDVKDEAPVGGNTQVPGIYSWPEVCALLPNQNNAYLKGANAPLIKVQDPAKRFGSYAYR 386

Mouse   320 LSNEKVPFATKGNQ--WVGYEDKESVKNKVGFLKEKKLAGAMVWALDLDDFQGTCQPKEFFPLTN 382
            .:::      ||:.  ||.:||.::..:|.|:::.:.|.|..::.|..|||:|.| ..|.:|:..
  Fly   387 AADK------KGDNGIWVSFEDPDTAADKAGYVRTENLGGVALFDLSYDDFRGLC-TNEKYPILR 444

Mouse   383 AIK 385
            |||
  Fly   445 AIK 447

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.