DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RAVER1 and GBP2

DIOPT Version :9

Sequence 1:NP_597709.3 Gene:RAVER1 / 125950 HGNCID:30296 Length:739 Species:Homo sapiens
Sequence 2:NP_009916.1 Gene:GBP2 / 850346 SGDID:S000000517 Length:427 Species:Saccharomyces cerevisiae


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RAVER1NP_597709.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..41
Nuclear localization signal. /evidence=ECO:0000255 45..60
RRM1_RAVER1 59..129 CDD:241107
RRM2_RAVER1 133..209 CDD:241109
RRM3_RAVER1 219..306 CDD:241111
Interaction with PTBP1. /evidence=ECO:0000250 307..395
Atrophin-1 <364..635 CDD:331285
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 391..474
GBP2NP_009916.1 RRM1_HRB1_GBP2 121..197 CDD:410184
RRM2_HRB1_GBP2 218..292 CDD:410185
RRM3_HRB1_GBP2 347..425 CDD:410186
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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