DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cd53 and Tsp5D

DIOPT Version :9

Sequence 1:NP_031677.1 Gene:Cd53 / 12508 MGIID:88341 Length:219 Species:Mus musculus
Sequence 2:NP_001259266.1 Gene:Tsp5D / 31540 FlyBaseID:FBgn0029837 Length:287 Species:Drosophila melanogaster


Alignment Length:256 Identity:62/256 - (24%)
Similarity:111/256 - (43%) Gaps:46/256 - (17%)


- Green bases have known domain annotations that are detailed below.


Mouse     1 MGMSSLKLLKYVLFIFNLLFWVCGCCILGFGIYF-LVQNTYGVLFRNLPFLTLGNILVIVGSIIM 64
            ||.:....::......|::.|:|.|..||.|::. |....|..|......|:...|.:.:|....
  Fly     1 MGNAGYTCIRRTFCWLNIILWLCSCAFLGAGLWLRLSYAGYATLLPQHAGLSADTIFMGIGGTGF 65

Mouse    65 VVAFLGCMGSIKENKCLLMSFFVLLLIILLAEVTIAILLFVYEQKLNTLVAEGLNDSIQ-HYHSD 128
            ||:|.||.|:..:::|||:.:|:|::::.::|..:..:.|::...|...:|..|...|: ||:|.
  Fly    66 VVSFFGCCGAWVQSRCLLVLYFMLIVMLFMSEFLVGSIAFLFRGGLGRTLANELRFGIERHYNSS 130

Mouse   129 N-------STMKAWDFIQTQLQCCGVNGSSDW---TSGP-----PSSC----------------- 161
            :       |....||.:|...:||||:...||   .|.|     |.||                 
  Fly   131 DRGSLVAPSVASIWDSVQQSFECCGVSSYEDWYDIQSWPGRRWVPESCCRTLYDQRQVLTEGSGD 195

Mouse   162 ------------PSGADVQGCYNKAKSWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQI 210
                        ||....:||.:..:|||......:|.:.:.:..:|:.|:..::.|.|.:
  Fly   196 GMMRPDCGRSENPSLWWDKGCAHSLQSWFTGQLNVVGAVGLGIAFVQLFGLITSMLLFCTV 256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cd53NP_031677.1 Tetraspannin 9..210 CDD:278750 60/246 (24%)
CD53_like_LEL 104..186 CDD:239417 30/126 (24%)
Tsp5DNP_001259266.1 Tetraspannin 8..256 CDD:278750 60/247 (24%)
NET-5_like_LEL 105..228 CDD:239418 30/122 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 140 1.000 Domainoid score I4733
eggNOG 1 0.900 - - E1_KOG3882
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 144 1.000 Inparanoid score I4418
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001172
OrthoInspector 1 1.000 - - otm43438
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X124
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.860

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