DRSC/TRiP Functional Genomics Resources

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Protein Alignment MSI2 and CG34334

DIOPT Version :10

Sequence 1:XP_005257072.1 Gene:MSI2 / 124540 HGNCID:18585 Length:346 Species:Homo sapiens
Sequence 2:NP_001097042.1 Gene:CG34334 / 5740122 FlyBaseID:FBgn0263829 Length:708 Species:Drosophila melanogaster


Alignment Length:102 Identity:25/102 - (24%)
Similarity:43/102 - (42%) Gaps:6/102 - (5%)


- Green bases have known domain annotations that are detailed below.


Human    94 KVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRH-RGFGFVT 157
            |.||..| ||   .|..::.:.||:.....|.:.:.|..||.:.......|:...|. ||:.||.
  Fly   523 KDAFKFR-QP---VRNVRLHIKGLTRQVTKEHITEIFGHFGALTAVDFPMDRFQGRQGRGYAFVE 583

Human   158 FEN-EDVVEKVCEIHFHEINNKMVECKKAQPKEVMFP 193
            :.. ||....:..::..:|:.|::.....|...:..|
  Fly   584 YSRPEDCASAIKHMNGGQIDGKLIRVSAFQESMLKAP 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MSI2XP_005257072.1 RRM1_MSI2 17..109 CDD:410153 6/14 (43%)
RRM2_MSI 111..184 CDD:240769 16/74 (22%)
CG34334NP_001097042.1 Herpes_BLLF1 <312..504 CDD:282904
RRM_RNPS1 537..610 CDD:409800 16/72 (22%)
Blue background indicates that the domain is not in the aligned region.

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