DRSC/TRiP Functional Genomics Resources

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Protein Alignment MSI2 and Hrb98DE

DIOPT Version :10

Sequence 1:XP_005257072.1 Gene:MSI2 / 124540 HGNCID:18585 Length:346 Species:Homo sapiens
Sequence 2:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster


Alignment Length:381 Identity:113/381 - (29%)
Similarity:168/381 - (44%) Gaps:77/381 - (20%)


- Green bases have known domain annotations that are detailed below.


Human     4 NGSQGTSGSAN--------DSQHDP---GKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPT 57
            |.:|..:|::|        ||..:|   .|:|||||.::|:.::|:.:|.|:|.|.:.:||:||.
  Fly     3 NSNQNQNGNSNGHDDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPR 67

Human    58 TKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSAN 120
            |||||||||:|::..:.:|:......|::|.:.::||.|.||:  ..|......||:|||.|..:
  Fly    68 TKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDD 132

Human   121 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
            ...:.::.||:.||.:.|..::.||.|.:.|||.||.|::.|.|:||.....|::|.|||:.|||
  Fly   133 HDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKA 197

Human   186 QPKE---------VMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATY--------------- 226
            .||:         ...|.|..|..||        .:|.|..|..|....:               
  Fly   198 LPKQNDQQGGGGGRGGPGGRAGGNRG--------NMGGGNYGNQNGGGNWNNGGNNWGNNRGGND 254

Human   227 -------------GRGYPGFAPSYGYQFP---GFPAAAYGPVAAAAVAAARGSVLNSYSAQPNFG 275
                         |.||.|...|:|...|   |.....:|           |...|..:...:||
  Fly   255 NWGNNSFGGGGGGGGGYGGGNNSWGNNNPWDNGNGGGNFG-----------GGGNNWNNGGNDFG 308

Human   276 APASPAGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYISAASPQPGSGFGHG 331
            ......|..|.|.||....|...|.....|..:.....|||  ..:.|   ||.:|
  Fly   309 GYQQNYGGGPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNY--GGNNQ---GFNNG 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MSI2XP_005257072.1 RRM1_MSI2 17..109 CDD:410153 36/96 (38%)
RRM2_MSI 111..184 CDD:240769 28/72 (39%)
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:409992 32/76 (42%)
RRM_SF 123..195 CDD:473069 28/71 (39%)

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