DRSC/TRiP Functional Genomics Resources

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Protein Alignment MSI2 and lark

DIOPT Version :10

Sequence 1:XP_005257072.1 Gene:MSI2 / 124540 HGNCID:18585 Length:346 Species:Homo sapiens
Sequence 2:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster


Alignment Length:379 Identity:86/379 - (22%)
Similarity:128/379 - (33%) Gaps:121/379 - (31%)


- Green bases have known domain annotations that are detailed below.


Human    20 PG----KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF-ADPASVDKVL 79
            ||    |:|||.|..:|....||..|.|:|.:.||.|:::        :|||.. .:....|.:.
  Fly     2 PGAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKN--------YGFVHMETEQQGRDAIQ 58

Human    80 GQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFD 144
            ....:.|:...|..:.|..||| |.  |.|.|||||.|:..|...:|::.|:::|.|.:..::  
  Fly    59 NLNGYTLNEFAIKVEAAKSRRA-PN--TPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV-- 118

Human   145 KTTNRHRGFGFVTFE-NEDVVEKVCEIHFHEINNK----MVECKKAQPKEVMFPP---------- 194
                  |.:|||..: ..||.:.:.|::...::.:    .|...:.:||..|..|          
  Fly   119 ------RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGRSG 177

Human   195 ----------GTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRG-YP---------------GF 233
                      |:.|..|..|..:.|.       ||.:  ..|||. ||               ||
  Fly   178 HWSKECPRLYGSAGGGREPPSPLSAG-------GYRD--RMYGRDPYPPPPPPPPFLRDRIMDGF 233

Human   234 APSYGY----------------------QFPGFPAAAYGPVAAAAVAAA---RGSVLNSYSAQPN 273
            . .|.|                      .||..|.:...|:......:.   ..||...|....:
  Fly   234 R-DYDYYDRRFEDSRDLYERRYQTSRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFS 297

Human   274 FGAPASPAGSNPARPGGFP---------------------GANSPGPVADLYGP 306
            ..:|..|..||.....|.|                     |...|.|....|.|
  Fly   298 RRSPPPPRSSNGMSRYGSPTPHGYEDFSRDAFDERMISSRGMRGPSPPGRRYAP 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MSI2XP_005257072.1 RRM1_MSI2 17..109 CDD:410153 28/93 (30%)
RRM2_MSI 111..184 CDD:240769 19/77 (25%)
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 20/72 (28%)
RRM1_2_CoAA_like 87..152 CDD:409779 18/72 (25%)
hnRNP-R-Q <88..>258 CDD:273732 38/187 (20%)

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