DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cbx2 and HP1c

DIOPT Version :9

Sequence 1:XP_006532166.1 Gene:Cbx2 / 12416 MGIID:88289 Length:594 Species:Mus musculus
Sequence 2:NP_651093.1 Gene:HP1c / 42696 FlyBaseID:FBgn0039019 Length:237 Species:Drosophila melanogaster


Alignment Length:121 Identity:30/121 - (24%)
Similarity:46/121 - (38%) Gaps:28/121 - (23%)


- Green bases have known domain annotations that are detailed below.


Mouse   331 IVHYMNRMSQSQVQAASR-------LALKAQATNKCGLG---LDLKVRTQKGGELGGSPAGGKVP 385
            ::.|..:|:......|.|       |.|.|..|:...:.   :::.....:..||.|. .||..|
  Fly   128 LIDYFQKMAPYSRHIAMRMKGVPEELRLAASRTSYPHISSAPVEVPPEVDQSAELAGH-LGGIAP 191

Mouse   386 KAPGGGAAEQQRGNHSGSPGAQLAPTQELSLQVLDLQSVKNG--VPGVGLLARHAP 439
            :      .:|...:|        || .:|:....||.||...  |||||.:|...|
  Fly   192 Q------VDQAPQHH--------AP-MDLANDTDDLASVSYSIPVPGVGDIAIDVP 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cbx2XP_006532166.1 CBX7_C 553..585 CDD:375056
HP1cNP_651093.1 Chromo 9..58 CDD:278797
Chromo_shadow 89..134 CDD:279701 1/5 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1628171at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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