DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cbx2 and Pc

DIOPT Version :10

Sequence 1:XP_006532166.1 Gene:Cbx2 / 12416 MGIID:88289 Length:594 Species:Mus musculus
Sequence 2:NP_524199.1 Gene:Pc / 40358 FlyBaseID:FBgn0003042 Length:390 Species:Drosophila melanogaster


Alignment Length:172 Identity:44/172 - (25%)
Similarity:64/172 - (37%) Gaps:53/172 - (30%)


- Green bases have known domain annotations that are detailed below.


Mouse   456 SGPTGANMTNAPT------------DNNKGEKLTCKAT--------ALPAPSVKRDTVKSVAASG 500
            :.|.|..:...||            |..:.||:..:|.        |.|..:...:|  :.|.||
  Fly   227 TSPDGPTIKPQPTQQVTPSQQQPFQDQQQAEKIASEAATQLKSEQQATPLATEAINT--TPAESG 289

Mouse   501 GQEGHTAPGEGRKPPALSELSTGEENSSSDSDP-DSTSLPSAAQNLSVAIQTSQD---------- 554
            .:|...|..||              |..:...| ::.::|....||  ||...|.          
  Fly   290 AEEEEVANEEG--------------NQQAPQVPSENNNIPKPCNNL--AINQKQPLTPLSPRALP 338

Mouse   555 ---WKPTR-SLIEHVFVTDVTANLITVTVKESPTSVGFFNLR 592
               |.|.: ::...|.:||||.||.|||::|..|..|||..|
  Fly   339 PRFWLPAKCNISNRVVITDVTVNLETVTIRECKTERGFFRER 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cbx2XP_006532166.1 CBX7_C 553..585 CDD:465385 14/45 (31%)
PcNP_524199.1 CD_polycomb 23..76 CDD:349291
CBX7_C 341..373 CDD:465385 13/31 (42%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.