DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cbfa2t3 and nvy

DIOPT Version :9

Sequence 1:XP_030099127.1 Gene:Cbfa2t3 / 12398 MGIID:1338013 Length:693 Species:Mus musculus
Sequence 2:NP_001261166.1 Gene:nvy / 37886 FlyBaseID:FBgn0005636 Length:757 Species:Drosophila melanogaster


Alignment Length:703 Identity:209/703 - (29%)
Similarity:308/703 - (43%) Gaps:179/703 - (25%)


- Green bases have known domain annotations that are detailed below.


Mouse    69 AAAEGGAPASPSRSRHRGSGSSDAVGLRLLRAHRKEK-------AAAMPDSPAEVKTQPRSTPPS 126
            |::.||..:|.|.|..:.|..:.:......|...:|:       ....||||.:   ..||..|.
  Fly    84 ASSSGGDKSSTSSSSSKDSSHTSSSRSERDRERERERERERDRLCRTPPDSPPD---SSRSLAPR 145

Mouse   127 MPPPPPTSSQGATRPPSFTPHTHGED----GPATSLPHGRFHGCLKWSMVCLLMNGSSHSPTAIH 187
            .|..|....|...|..|.:|..:|..    |..:|                    |:|.:||   
  Fly   146 SPHSPLQLHQHPQRNASVSPVVNGSSSGGGGVGSS--------------------GTSPTPT--- 187

Mouse   188 GAPSTPNGFSNGPATSSTASLSTQHLPPACGARQLSKLKRFLTTLQQFGSDI-SPEIGERVRTLV 251
              |.:.:..|...|.::.|:...:.      ||.:||:::||..|.||..:: .||:.||||.||
  Fly   188 --PGSQHAASLAAAAAAAAAAHVEQ------ARLVSKMRKFLGALVQFSQELGQPEVCERVRALV 244

Mouse   252 LGLVNSTLTIEEFHAKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARLAKQTPAQYLAQHEQL 316
            |.|.:.::::|||...||||.|.||||:|:|.||.::.|:|||:|..||...|:..||:..:||.
  Fly   245 LSLCSGSISVEEFRLALQEAINLPLRPYVVPLLKNSIALVQREILALARATNQSALQYVTNNEQA 309

Mouse   317 LLDASATSPVDSSE-----LLLEV-NENG-----KRRTPDRTKENG------------------- 351
            ::: .|...|.|:|     :.||. ..||     |||:.|...|:|                   
  Fly   310 VME-FAPHGVASAEFGDIFIQLEAPTSNGSSAVFKRRSSDSMMEHGGHNGLQEWNEYMASGGAGY 373

Mouse   352 ----SDRDPLHPDHLSKRSCTLSPAQRCSPSNGLPHPT---PPPPPHYRLEDMAMAHHFRDSYRH 409
                |.|..|||.|    |.........|.:.|||...   .......|:.: |.|.|.....|.
  Fly   374 PPPPSKRLTLHPAH----SVVAYGEYGVSSAEGLPSAAAFMQRDERDLRMSE-AQARHAAPPQRA 433

Mouse   410 PDPRELRERHRPLAIPGSRQEEVIDHRLTEREWAEEWKHLNSLLNCIMDMVEKTRRSLTVLRRCQ 474
            .:|:.......|.| ||:..|             ||||:::::||||..||:||:|::|:|:   
  Fly   434 GNPQPNPNAAAPGA-PGAGGE-------------EEWKNIHTMLNCISAMVDKTKRAITILQ--- 481

Mouse   475 EADREELNHWIRCYSDSEEGKKGPTPISARSLNSCSGPEGSQLDVHRDFTPRTLSGYMPE----- 534
                                ::|..|         ..|...|     :.||..::....:     
  Fly   482 --------------------QRGIEP---------QHPNSGQ-----EVTPAAMAELRRQTEEKV 512

Mouse   535 -EIWRKAEEAVNEVKRQAMSELQKAVSDAERKAHELITTERAKMERALAEAKRQASED------A 592
             |..|.||:||.:|||||:.|:|:||..||.:|.|::|.||.:||:...|..|.:|.:      :
  Fly   513 AEFKRNAEDAVTQVKRQAVIEIQRAVVAAETRAAEIMTQERLRMEKFFMEMSRHSSGERDLDNKS 577

Mouse   593 LTVINQQEDSS--ESCWNCGRKASETCSGCNAARYCGSFCQHKDWEKHHHVCGQ----------- 644
            .::.:.|..|:  :.||||||||:|||||||.||||.:.||::||:.||.|||.           
  Fly   578 PSMASAQNGSNLQQQCWNCGRKATETCSGCNMARYCSASCQYRDWDSHHQVCGNTRASELSAKHL 642

Mouse   645 ------SLQGPAAAVADPLPG-----QPDATASPSEAGS-AGPSRPCSPGPPG 685
                  ||:...|..:.|.|.     |..|.|:.:.||: ...|.|.  |.||
  Fly   643 HSASNLSLRNAMATRSPPTPNSAAHLQAAAAAAAAAAGAREAVSAPV--GGPG 693

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cbfa2t3XP_030099127.1 TAFH 221..310 CDD:369407 42/89 (47%)
NHR2 429..495 CDD:370124 16/65 (25%)
NtpH 534..>600 CDD:225368 27/77 (35%)
zf-MYND 606..642 CDD:366792 25/35 (71%)
nvyNP_001261166.1 TAFH 213..304 CDD:197785 43/90 (48%)
NHR2 <454..>482 CDD:285941 15/50 (30%)
zf-MYND 593..629 CDD:280009 25/35 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846901
Domainoid 1 1.000 89 1.000 Domainoid score I7820
eggNOG 1 0.900 - - E1_28KWJ
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H74543
Inparanoid 1 1.050 227 1.000 Inparanoid score I3461
Isobase 1 0.950 - 0 Normalized mean entropy S6828
OMA 1 1.010 - - QHG50012
OrthoDB 1 1.010 - - D198762at33208
OrthoFinder 1 1.000 - - FOG0001881
OrthoInspector 1 1.000 - - otm44293
orthoMCL 1 0.900 - - OOG6_103448
Panther 1 1.100 - - LDO PTHR10379
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5791
SonicParanoid 1 1.000 - - X1413
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.750

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