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Protein Alignment Car6 and CAH1

DIOPT Version :9

Sequence 1:	NP_033932.2	Gene:	Car6 / 12353	MGIID:	1333786	Length:	317	Species:	Mus musculus
Sequence 2:	NP_523561.1	Gene:	CAH1 / 34786	FlyBaseID:	FBgn0027844	Length:	270	Species:	Drosophila melanogaster

Alignment Length:	268	Identity:	83/268 - (30%)
Similarity:	125/268 - (46%)	Gaps:	35/268 - (13%)

- Green bases have known domain annotations that are detailed below.

Mouse    21 WSYSGDDGVGESQWSEQYPSCGGERQSPIDVKTEEVMFNPSLK--PLSLVNYEKENLEFTMTNNG 83
            |.|:.::  |.:.|:::||...|.||||:|:..........|.  ||.. .|..|:.: ::.|.|
  Fly     5 WGYTEEN--GPAHWAKEYPQASGHRQSPVDITPSSAKKGSELNVAPLKW-KYVPEHTK-SLVNPG 65

Mouse    84 HTVSIDLPPSMYLETSDGTE------------FISKAFHFHWGGRDWELSGSEHTIDGIRSIMEA 136
            :...:|:         :|.:            |..:.||.|||..|  ..|||||:||:....|.
  Fly    66 YCWRVDV---------NGADSELTGGPLGDQIFKLEQFHCHWGCTD--SKGSEHTVDGVSYSGEL 119

Mouse   137 HFVHFN-KEYGTYENAKDQKNGLAVLAVLFKI-DEYAENTYYSDIISALKNIEKPGETTTLKDTT 199
            |.||:| .:|.::..|....:|||||.|..|. :.:||   ...:.|.|:.:...|:..||....
  Fly   120 HLVHWNTTKYKSFGEAAAAPDGLAVLGVFLKAGNHHAE---LDKVTSLLQFVLHKGDRVTLPQGC 181

Mouse   200 IRNLLPKDVHHYYTYPGSLTTPPCTENVQWFVLRDKVTLSKAQVVTIEN-SVMDHNNNTIQNGYR 263
            ....|..|||.|:||.||||||||:|:|.|.|.:..:.:|..|:..:.| :..|.......|.:.
  Fly   182 DPGQLLPDVHTYWTYEGSLTTPPCSESVIWIVFKTPIEVSDDQLNAMRNLNAYDVKEECPCNEFN 246

Mouse   264 STQPNNHR 271
            ....||.|
  Fly   247 GKVINNFR 254

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.