DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Capn1 and CalpC

DIOPT Version :9

Sequence 1:NP_001103974.1 Gene:Capn1 / 12333 MGIID:88263 Length:713 Species:Mus musculus
Sequence 2:NP_573118.2 Gene:CalpC / 32597 FlyBaseID:FBgn0260450 Length:681 Species:Drosophila melanogaster


Alignment Length:715 Identity:203/715 - (28%)
Similarity:341/715 - (47%) Gaps:83/715 - (11%)


- Green bases have known domain annotations that are detailed below.


Mouse    38 LGQDYETLRARCLQSGVLFQDEAFPPVSHSLGFKELGPHSSKTYGIKWKRPTELMSN-------- 94
            :...||.:.:.|....||::|..||.|..|:.:.:..|     :..:|||..:|..:        
  Fly     1 MASKYERILSDCRSKNVLWEDPDFPAVQSSVFYYQTPP-----FTFQWKRIMDLADSGSGAVAAN 60

Mouse    95 ----PQFIVDGATRTDICQGALGDCWLLAAIASLTLNETILHRVVPYGQSFQDGYAGIFHFQLWQ 155
                |.|:.:.| ..|:..|.:||.||::.:..|:....:.:||||..|:....: |:|.|:||.
  Fly    61 SSAAPVFLNESA-EFDVVPGKMGDRWLVSCLGLLSSLRNLFYRVVPADQTLASAH-GVFRFRLWW 123

Mouse   156 FGEWVDVVIDDLLPTKDGKLVFVHSAQGNEFWSALLEKAYAKVNGSYEALSGGCTSEAFEDFTGG 220
            .||||:|::||.|||.:|:|.|:.....|.||:||||||.||::||||||..|..|:...|..||
  Fly   124 CGEWVEVLVDDRLPTINGRLAFMQPQASNCFWAALLEKAIAKLHGSYEALKYGTRSDGLTDLLGG 188

Mouse   221 VTEWYDLQKAPSDLYQIILKALERGSLLGCSINISDIRDLEA-ITFKNLVR--------GHAYSV 276
            |     :::.|.....|..:.|:  .||..:..::.:.|..| :..|||..        ...|.:
  Fly   189 V-----VRQMPILSDNIRPQTLK--ELLTTTCIVTCLADKSATVAKKNLAERMPNGILVNVNYRL 246

Mouse   277 TGAKQV-TYQGQRVNLIRMRN-----PWGE-VEWKGPWSDSSYEWNKVDPYEREQLRVKMEDGEF 334
            :...:| |..|..|.|:.:::     |:|| ..:.|.||..|..|.:|...||.:|..::..|||
  Fly   247 SSLDKVKTLMGDSVQLVCLKDTFSSKPFGEKTHFLGDWSPMSKTWERVSQVERARLIRQLGPGEF 311

Mouse   335 WMSFRDFIREFTKLEICNLTPDA------LKSRTLRNWNTTFYEGTWRRGSTAGGCRNYPATFWV 393
            |:||.||:..|:.:|:..|..:.      ||||.| :|....::|.|:||.|||||||: .:|.:
  Fly   312 WLSFCDFVEIFSTMEVVYLDTETSNDEEMLKSRPL-HWKMKMHQGQWKRGVTAGGCRNH-ESFHI 374

Mouse   394 NPQFKIRLEEVDDADDYDNRESGCSFLLALMQKHRRRERRFGRDMETIGFAVYQVPRELAGQPVH 458
            |||..|.:::..|             |:..:.:|...|.:      .|||.:|....|...... 
  Fly   375 NPQLLISVQDEQD-------------LVIALNQHTAVEPK------VIGFTMYTWDGEYMLSEC- 419

Mouse   459 LKRDFFLANASRAQSEHFINLREVSNRIRLPPGEYIVVPSTFEPNKEGDFLLRFFSEKKAGTQEL 523
            |::|||..:.|...|: :.|.|.||....|..|.|:::|:|:||.:|..|.:|...........|
  Fly   420 LQKDFFKNHVSYLNSD-YGNTRHVSYHTHLEAGHYVLIPTTYEPAEEAHFTVRILGTGSFRLSCL 483

Mouse   524 DDQIQANLPDEKVLSEEEIDD----------NFKTLFSKLAGDDMEISVKELQTILNRIISKHKD 578
            :.|....|.....|...:.:.          .::.::.:||.::..|:..||..:|...:.  .|
  Fly   484 ETQTMILLDPFPALKSTDAERCGGPKVKSVCQYEPVYMQLADENKTINCFELHELLEACLP--ND 546

Mouse   579 LRTNGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMAI 643
            ......:::.||.::.|.||.|:|::...:|......::::..:|:.:..:|:|.:.|..:|.|:
  Fly   547 YIKGCANIDICRQVIALQDRSGSGRITFQQFKTFMVNLKSWQGVFKMYTKEKAGILRAERLRDAL 611

Mouse   644 EAAGFKLNKKLHELIITRYSEPDLAVDFDNFVCCLVRLETMFRFFKLLDTDLDGVVTFDLFKWLQ 708
            ...||:|:..:...:|.||...|..:...:||..::.|.|.|..|.|.:.....|:...|..|::
  Fly   612 CDIGFQLSTDIMNCLIQRYIRKDGTLRLSDFVSAVIHLTTAFNQFHLKNYGQVNVIEVHLHDWIK 676

Mouse   709  708
              Fly   677  676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Capn1NP_001103974.1 Peptidase_C2 56..352 CDD:279042 104/323 (32%)
Domain III 355..525 52/175 (30%)
Calpain_III 366..518 CDD:279416 46/151 (30%)
Linker 526..541 3/14 (21%)
PTZ00184 537..680 CDD:185504 31/152 (20%)
Domain IV 542..712 38/177 (21%)
EF-hand_8 556..609 CDD:290545 12/52 (23%)
EFh 589..643 CDD:238008 13/53 (25%)
EFh 622..704 CDD:298682 21/81 (26%)
CalpCNP_573118.2 CysPc 7..329 CDD:238004 107/335 (32%)
Calpain_III 346..483 CDD:238132 47/159 (30%)
FRQ1 <567..648 CDD:227455 18/80 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0045
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D704215at2759
OrthoFinder 1 1.000 - - FOG0000071
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10183
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.920

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