Sequence 1: | XP_006518538.1 | Gene: | Cacna1d / 12289 | MGIID: | 88293 | Length: | 2207 | Species: | Mus musculus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001261172.1 | Gene: | NaCP60E / 37981 | FlyBaseID: | FBgn0085434 | Length: | 2896 | Species: | Drosophila melanogaster |
Alignment Length: | 3033 | Identity: | 587/3033 - (19%) |
---|---|---|---|
Similarity: | 974/3033 - (32%) | Gaps: | 1267/3033 - (41%) |
- Green bases have known domain annotations that are detailed below.
Mouse 80 LSQRKRQQYAKSKKQGNSSNSRPARALFCLSLNNPIRRACISIVEWKPFDIFILLAIFANCVALA 144
Mouse 145 IYIPFPEDDSNSTNHNLEKVEYAFLIIFTVETFLKIIAYGLLLHPNAYVRNGWNLLDFVIVIVGL 209
Mouse 210 FSVILEQLTKETEGGNHSSGKSGGFDVKALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHI 274
Mouse 275 ALLVLFVIIIYAIIGLELFIGKMHKTC------------------FFADSD-IVAEEDPAP--CA 318
Mouse 319 FSGNGRQCTANGTECRSGWVGPNGGITNFDNFAFAMLTVFQCITMEGWTDVLYWVNDAIGWEWPW 383
Mouse 384 --VYFVSLIILGSFFVLNLVL-------------------------------------------- 402
Mouse 403 -----------GVLSGEFSKEREKAK----------------ARGD------------------- 421
Mouse 422 --------FQKLREKQQLEED------------------LKGYLDWITQAEDI-DPENEEEGGEE 459
Mouse 460 GK--RNTSMPTSETESVNTEN------VSGEGETQGCCGTLWCWWKRRGAAKT-----GPSGCR- 510
Mouse 511 -RWGQAISKSKLSRRWRRWNRFNR----------RRCRAAVKSVTFY--WL-------------- 548
Mouse 549 ----VIVLVFLNTLTISSEHYNQPDWLTQIQDIANKVLLALFTCEMLVKMYSLGLQAYFVSLFNR 609
Mouse 610 FDCFVVCGGITETILVELELMSPLGVSVFRCVRLLRIFKVTRHWTSLSNLVASLLNSMKSIASLL 674
Mouse 675 LLLFLFIIIFSLLGMQLFGGKF---NFDETQTKRSTFDNFPQALLTVFQILTGEDWNAVMYDGIM 736
Mouse 737 AYGGPSSSGMIVCI-YFIILFICGNYILLNVFLAIAVDNLADAESLNTAQKEEAEEKE------- 793
Mouse 794 ------RKKIARKESLENK-----------------------------KNNKPEV---------- 813
Mouse 814 ---------------NQIANSDNKVTIDD------------------------------------ 827
Mouse 828 --------------------------------------------------YQEDAE--------D 834
Mouse 835 KDPYP------------------------------------------------------------ 839
Mouse 840 --------------------------------------------PCDVP-----VGEEEE----- 850
Mouse 851 -----------------------------------------EEEE-------------------- 854
Mouse 855 -------------------------DEPEVPAGP------------------------------- 863
Mouse 864 --RPRRISE-------------------------------------------------------- 870
Mouse 871 ---LNMKEKIAPIPEGS------------------------------------------------ 884
Mouse 885 -----------------------------------------------AFFILSKTNPIRVGCHKL 902
Mouse 903 INHH------------------------------------------------------------- 906
Mouse 907 ---IFTNL--------------------------------------------------------- 911
Mouse 912 --------------------------------------ILVFIMLSSAALAAED-PIRSHSFRNT 937
Mouse 938 ILGYFDYAFTAIFTVEILLKMTTFGAFLHKGAFCRNYFNLLDMLVVGVSLVSFGIQSSA-ISVVK 1001
Mouse 1002 ILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTTLLQFMFACIGVQLFKGKFYRCTD 1066
Mouse 1067 EAKSNPEECRGLFILYKDGDVDSPVVRERIWQNSDFNFDNVLSAMMALFTVSTFEGWPALLYKAI 1131
Mouse 1132 DSNGENVGPVYNYRVEISIFFIIYIIIVAFFMMNIFVGFVIVTFQ------EQGEKEYKNCELDK 1190
Mouse 1191 NQRQCVEYALKARP---LRRYIPKNPYQYKFWYVVNSSPFEYMMFVLIMLNTLCLAMQHYEQSKM 1252
Mouse 1253 FNDAMDILNMVFTGVFTVEMVLKVIAFKPKGYFSDAWNTFDSLIVIGSIIDVALSEADHYFTDAW 1317
Mouse 1318 NTFDALIVVGSVVDIAITEVNPSESETIPLPTATPGNSEESNRISITFF---RLFRVMRLVKLLS 1379
Mouse 1380 RGEGIRTLLWTFIKSFQALPYVALLIAMLFFIYAVIGMQMFGKVAMRDNNQINRNNNFQTFPQAV 1444
Mouse 1445 LLLFRCATGEAWQEIMLACLPGKLCDPDSD-----YNPGEEYTCGSN-FAIVYFISFYMLCAFLI 1503
Mouse 1504 INLFVAVIMDNFDYLTRDWSI-LGPHHLDEFKRIWSEYDPEAKGRIKHLDVVTLLRRIQPPLGFG 1567
Mouse 1568 KLCPHRVACKRLVAMNMPLNSDGTVMFNATLFALVRTAL-KIKTEGNLEQANEELRAVIKK---- 1627
Mouse 1628 -----------IWKKTSMKLLDQVVPPAGDDEVTVGKFYATFLIQ----DYFRKFKKRKEQGLVG 1677
Mouse 1678 KYPAKNTTI-ALQAGLRTLHDIGPEI-RRAISC----------------DLQ------------- 1711
Mouse 1712 ----DDEPEDSKPEEEDVFKRNGALLGNHVNHVNSDRR---------------DSL--------- 1748
Mouse 1749 QQTNTTHRPLHVQRPSMPPASDTEKPL--FPPAGNSGCHNHHNHNSIGKQAPTSTNANLNNANMS 1811
Mouse 1812 KAAHGKPPSIGNLEHVSENGHYSCKHDRELQRRSSIKRTRYYETYIRSESGDEQFPTICREDPEI 1876
Mouse 1877 HGYFRDPRCLG---------------EQEYFSSEECCEDDSSPTWSRQNYNYYNRYPGSSMDF-- 1924
Mouse 1925 ERPRGYHHPQGFLEDDDSPTGYDSRRSPRRRLLPPTPPSHRRSSFNFECLRRQSSQDDVLPSPAL 1989
Mouse 1990 PHRAALPLHLMQQQIMAVAGLDSSKAQKYSPSHSTRSWA-----------------TPPATPPYR 2037
Mouse 2038 D-----------WSPCYTPLIQVDRSESMDQVNGSLPSLHRSS 2069 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Cacna1d | XP_006518538.1 | Ion_trans | 125..417 | CDD:366146 | 96/369 (26%) |
Ion_trans | 545..780 | CDD:366146 | 73/258 (28%) | ||
Ion_trans | 905..1182 | CDD:366146 | 92/443 (21%) | ||
Ion_trans | 1224..1523 | CDD:366146 | 91/307 (30%) | ||
GPHH | 1532..1585 | CDD:374878 | 19/52 (37%) | ||
Ca_chan_IQ | 1596..1667 | CDD:370105 | 18/90 (20%) | ||
CAC1F_C | 1690..2206 | CDD:374867 | 87/485 (18%) | ||
NaCP60E | NP_001261172.1 | Ion_trans | 152..371 | CDD:278921 | 75/239 (31%) |
Ion_trans | 705..902 | CDD:278921 | 61/206 (30%) | ||
Ion_trans | 1768..2019 | CDD:278921 | 81/261 (31%) | ||
Na_channel_gate | 2009..2063 | CDD:240441 | 11/55 (20%) | ||
Ion_trans | 2085..2320 | CDD:278921 | 81/289 (28%) | ||
GPHH | 2331..2386 | CDD:293510 | 20/59 (34%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG2301 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R175 |
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.840 |