DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ciita and CG8197

DIOPT Version :10

Sequence 1:NP_001289547.1 Gene:Ciita / 12265 MGIID:108445 Length:1155 Species:Mus musculus
Sequence 2:NP_610445.1 Gene:CG8197 / 35912 FlyBaseID:FBgn0033369 Length:387 Species:Drosophila melanogaster


Alignment Length:431 Identity:88/431 - (20%)
Similarity:139/431 - (32%) Gaps:146/431 - (33%)


- Green bases have known domain annotations that are detailed below.


Mouse   747 LAQCNEIKDKELPQYLALTPR--------------KKRPYDNWLEGVPRFLAGLVFQPRA----H 793
            |..| |...||.|...|...|              .||||..:.      ...|.|:.|.    |
  Fly     5 LLPC-EYNPKECPSPAAEKSRLFTILLLYCWQREYDKRPYRQFQ------FKRLTFEERIGRRYH 62

Mouse   794 CLGALVEPAVAAVADRKQKVLTRYLKR----------LKLGTLRAGRLLELLHCAHETQQPGIWE 848
            |:             |..:::..||.|          |.:....||.|.:.:    .:..| :|.
  Fly    63 CI-------------RDLRIIVNYLLRRPQLSVQISSLVVSNWDAGLLKDFV----RSLLP-VWY 109

Mouse   849 ------------------HVAHQLPGHLSFLGTRLTPPDVYVLG---------RALETAS---QD 883
                              :.|......||..||.||..||.:|.         |.|..:|   ..
  Fly   110 IELRLMRFPREFFVMLRLNAAKMNVSQLSLEGTPLTDEDVRILREFLLVSKTLRRLNVSSCSLTQ 174

Mouse   884 FSLDL------RQTGVEPSGLGNLVGLSC------VTSFRASLSDTMALWESLQQQGEAQLLQAA 936
            |:..|      :..||.......|:|:|.      ::|..:||.....||               
  Fly   175 FNFALIADGVYKSPGVRRLSANRLLGMSLSLDTEKISSVLSSLLMQNTLW--------------- 224

Mouse   937 EEKFTIEPFKAKSPKDVEDLDRLVQTQRLRNPSEDAAKDLPAIRDLKKLEFALGPILGPQAFPTL 1001
              ..::|..:..:...:...:.|.:|.                ...::|..|...| ||.....|
  Fly   225 --ALSLEHCELTAQDMIPIAEHLARTN----------------SKFRRLRIACNKI-GPDGAFFL 270

Mouse  1002 AKILPAFSSLQHLDLDSLSENKIGDKGVSKLSATFPQLKALETLNLSQNNITDVGACKLAEALPA 1066
            .:.:....:|:.|||...|....|.:.|:|..|:   .:.|:.|:|:.|   |:|...:...|.|
  Fly   271 LRGMSMGGNLELLDLSYCSIGTHGGEWVAKYLAS---CRRLQVLHLNYN---DMGPTAVNLILLA 329

Mouse  1067 LAK--SLLRLSLYNNCICDKGAKSLAQVLPDMVSLRVMDVQ 1105
            :.|  .|.:|:||.|....:.|         |:..|::|.:
  Fly   330 MKKQCKLEKLTLYGNHFDSRTA---------MIVRRLLDAE 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CiitaNP_001289547.1 Required for acetyltransferase activity. /evidence=ECO:0000250|UniProtKB:P33076 171..210
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 217..237
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 297..357
NACHT 439..610 CDD:428606
NLRC4_HD2 738..843 CDD:465499 25/123 (20%)
LRR_RI 814..1139 CDD:238064 70/346 (20%)
leucine-rich repeat 982..1008 CDD:275381 6/25 (24%)
LRR 1 1010..1033 8/22 (36%)
leucine-rich repeat 1011..1041 CDD:275380 9/29 (31%)
LRR 2 1041..1062 6/20 (30%)
leucine-rich repeat 1042..1070 CDD:275380 9/29 (31%)
LRR 3 1070..1091 6/20 (30%)
leucine-rich repeat 1071..1098 CDD:275380 7/26 (27%)
LRR 4 1098..1119 2/8 (25%)
leucine-rich repeat 1099..1126 CDD:275380 2/7 (29%)
CG8197NP_610445.1 RNA1 <133..345 CDD:444072 55/251 (22%)
leucine-rich repeat 202..220 CDD:275380 4/17 (24%)
leucine-rich repeat 223..251 CDD:275380 5/60 (8%)
leucine-rich repeat 252..279 CDD:275380 6/27 (22%)
leucine-rich repeat 280..307 CDD:275380 9/29 (31%)
leucine-rich repeat 308..335 CDD:275380 9/29 (31%)
leucine-rich repeat 336..357 CDD:275380 7/29 (24%)
Blue background indicates that the domain is not in the aligned region.

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