DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd1 and Smyd4-3

DIOPT Version :9

Sequence 1:NP_001153599.1 Gene:Smyd1 / 12180 MGIID:104790 Length:490 Species:Mus musculus
Sequence 2:NP_725048.1 Gene:Smyd4-3 / 36234 FlyBaseID:FBgn0033633 Length:660 Species:Drosophila melanogaster


Alignment Length:430 Identity:91/430 - (21%)
Similarity:160/430 - (37%) Gaps:107/430 - (24%)


- Green bases have known domain annotations that are detailed below.


Mouse     6 MEN------VEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHR 64
            :||      |.:.::..:||..:|:.:....:.:..||.:.:|:.:......|..||.|......
  Fly   232 LENEFVSPLVRIDSNRQEGRFARASADVKPGEELLVERPFVSVLLEKFAKTHCENCFMRTVVPVA 296

Mouse    65 CGQCKFAHYCDRTCQKDAWLN-HKNECAAIK---KYGKVPNENIRLA----------ARIMWRVE 115
            |.:|....||...|:::|... ||.||..:.   :.|...|.:|.|.          .::...::
  Fly   297 CPRCADVLYCSEQCREEASKKYHKYECGIVPIIWRSGASINNHIALRIIASKPLDYFLKLKPTID 361

Mouse   116 REGTGLTEGCLVSV--DDLQ---------------NHVEH----------------FGEE-EQKE 146
            .|   ||...|:|:  ||.:               |..:|                ||.| :..|
  Fly   362 EE---LTPEQLISLPKDDFRRVAQLERHQGERQPSNFFQHVLMARFLTNCLRAGGYFGSEPKPDE 423

Mouse   147 LRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPN 211
            :.:.....|     :|.|| :|:.:|  .|...:.|:.|.:.....:|..|:|.|.|.||.|.|.
  Fly   424 VSIICSLVL-----RSLQF-IQFNTH--EVAELHKFSSSGREKSIFIGGAIYPTLALFNHSCDPG 480

Mouse   212 CTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSE--ERRRQLKKQYYFDC 274
            ....|..             ..|.:.::..|..|..:..:|.......|  ||:.:||..|:|:|
  Fly   481 VVRYFRG-------------TTIHINSVRPIEAGLPINENYGPMYTQDERSERQARLKDLYWFEC 532

Mouse   275 SCEHCQKGLKDDLFLAAKEDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQ 339
            ||:.|           ....|| ..::.:::|:|      :.|...:.....||...|.:.:.|.
  Fly   533 SCDAC-----------IDNWPK-FDDLPRDVIRF------RCDAPNNCSAVIEVPPSCNDFMVKC 579

Mouse   340 EPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD 379
            ......||  :|:.|.:       :|..|..:..|:|:.:
  Fly   580 VTCGEITN--ILKGLKV-------MQDTEMMTRTAKRLYE 610

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Smyd1NP_001153599.1 SET_SMYD1 7..281 CDD:380924 74/329 (22%)
S-adenosyl-L-methionine binding 17..19 0/1 (0%)
zf-MYND 52..90 CDD:396356 12/38 (32%)