DRSC/TRiP Functional Genomics Resources

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Protein Alignment CLN3 and btn1

DIOPT Version :10

Sequence 1:XP_054170579.1 Gene:CLN3 / 1201 HGNCID:2074 Length:489 Species:Homo sapiens
Sequence 2:NP_593598.1 Gene:btn1 / 2543645 PomBaseID:SPAC607.09C Length:396 Species:Schizosaccharomyces pombe


Alignment Length:407 Identity:133/407 - (32%)
Similarity:197/407 - (48%) Gaps:52/407 - (12%)


- Green bases have known domain annotations that are detailed below.


Human    92 FWLLGLCNNFSYVVMLSAAHDILSHKRTSGNQSHVDPGPTPIPHNSSSRFDCNSVSTAAVLLADI 156
            |.:.||.||..||::||||.|::.                            .:||...|||::|
pombe    16 FLIFGLLNNLLYVIILSAALDLVG----------------------------ANVSKGVVLLSNI 52

Human   157 LPTLVIKLLAP-LGLHLLPYSPRVLVSGICAAGSFV---LVAFSHSVGTSLCGVVFASISSGLGE 217
            :|:|..||.|. |.:|...::.|:   |.|...|.:   .:|:|.||.:.:.||..|:|||..||
pombe    53 VPSLACKLSASILHVHKFKFAKRI---GFCVFMSILGMQWIAWSSSVPSKMLGVSLAAISSSFGE 114

Human   218 VTFLSLTAFYPRAVISWWSSGTGGAGLLGALSYLGLTQ-AGLSPQQTLLSMLGIPALLLASYFLL 281
            ::||.|::.|....:..||||||.|||.||.|||.:|. ...|.:.||:....:|..||..||.:
pombe   115 ISFLHLSSRYHSVSLPCWSSGTGLAGLFGASSYLVMTTWFNFSVRSTLIISSFLPLFLLIMYFFV 179

Human   282 LTSPEAQDPGGEEEAESAARQPLIRTEAPESKPGSSS---SLSLRERWTVFKG-LLWYIVPLVVV 342
            |...|:..|        :........|:.:.:.|..|   ..||::.:...:. ||.::.|..:|
pombe   180 LPESESTSP--------SINNNYTPIESIDLRAGHVSFNFVNSLKQTFIFMQPYLLSHMFPQFLV 236

Human   343 YFAEYFINQGLFELLFFWNTSL---SHAQQYRWYQMLYQAGVFASRSSLRCCRIRFTWALALLQC 404
            ||:||.||.|:...|.|.....   |....|..||.:||.|||.||||:....:.:...||:.|.
pombe   237 YFSEYTINIGVAPTLLFPPEKAGFSSFRDFYPTYQTVYQIGVFLSRSSISFFTVPYLRTLAITQF 301

Human   405 LNLVFLLADVWFGFLPSIYLVFLIILYEGLLGGAAYVNTFHNIALETSDEHREFAMAATCISDTL 469
            :.|:|.:.........|.:.|..:|..|||:||..|||.:|::. .|....||.|::....||:.
pombe   302 IILLFTILQSALYLTSSYHFVLFLIFVEGLIGGTVYVNVYHSLQ-TTESSQRELAISTVGSSDSS 365

Human   470 GISLSGLLALPLHDFLC 486
            ||.|:.|::|.|...||
pombe   366 GIFLASLVSLFLEPSLC 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CLN3XP_054170579.1 CLN3 90..488 CDD:460570 133/407 (33%)
btn1NP_593598.1 CLN3 16..382 CDD:460570 131/405 (32%)

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