DRSC/TRiP Functional Genomics Resources

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Protein Alignment Neurod4 and cato

DIOPT Version :9

Sequence 1:NP_001316418.1 Gene:Neurod4 / 11923 MGIID:108055 Length:330 Species:Mus musculus
Sequence 2:NP_477344.1 Gene:cato / 36813 FlyBaseID:FBgn0024249 Length:189 Species:Drosophila melanogaster


Alignment Length:112 Identity:41/112 - (36%)
Similarity:62/112 - (55%) Gaps:7/112 - (6%)


- Green bases have known domain annotations that are detailed below.


Mouse    39 GSYGMLGTLTEEHDSIEEDEEEEED----GDKPKRRGPKKKKMTKARLERFRARRVKANARERTR 99
            |:...||.:.|......:.:.:...    |...::..|::..::....:|   ||..||||||.|
  Fly    54 GTQTELGPIMEAQGQHTQPQTKRRSNSFTGSDGRKSSPEQTNLSPTVQKR---RRQAANARERKR 115

Mouse   100 MHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVLETG 146
            |:|||.|.:.||.|:|..|..|||||.|||::|::||.||.::|..|
  Fly   116 MNGLNAAFERLREVVPAPSIDQKLSKFETLQMAQSYILALCDLLNNG 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Neurod4NP_001316418.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 23..80 6/44 (14%)
HLH 88..144 CDD:238036 32/55 (58%)
Neuro_bHLH 146..263 CDD:289310 1/1 (100%)
catoNP_477344.1 HLH 104..155 CDD:278439 30/50 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2611
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.940

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