DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Arx and gsb-n

DIOPT Version :10

Sequence 1:NP_031518.2 Gene:Arx / 11878 MGIID:1097716 Length:564 Species:Mus musculus
Sequence 2:NP_523862.1 Gene:gsb-n / 38004 FlyBaseID:FBgn0001147 Length:449 Species:Drosophila melanogaster


Alignment Length:300 Identity:100/300 - (33%)
Similarity:128/300 - (42%) Gaps:69/300 - (23%)


- Green bases have known domain annotations that are detailed below.


Mouse   298 LLHPEDAEGKDGEDSVCLS----------AGSDSEEGL-LKRKQRRYRTTFTSYQLEELERAFQK 351
            ||...|...:||.....::          :.::||.|: |||||||.|||||:.|||.|||||.:
  Fly   139 LLRGSDRGSEDGRKDYTINGILGGRDSDISDTESEPGIPLKRKQRRSRTTFTAEQLEALERAFSR 203

Mouse   352 THYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKRE----------KAGAQTHPPGLPFPGPL 406
            |.||||:||||||....|||||:||||.||||:.||..          .:|:.....|:...|  
  Fly   204 TQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSGGSNSGLSPMNSGSSNVGVGVGLSG-- 266

Mouse   407 SATHPL-------SPYLDASPFP------------PHHPA-LDSAWTAAAAAAAAAFPSLPPPPG 451
             ||.||       ......||.|            .||.| ..|:..:||.|||||...  ...|
  Fly   267 -ATAPLGYGPLGVGSMAGYSPAPGTTATGAGMNDGVHHAAHAPSSHHSAATAAAAAHHH--TQMG 328

Mouse   452 SASLPPS----GAPLGLST--FLGAAVFRHPAFIS---PAFGRL----FSTMAPLTSASTAAALL 503
            ...|..|    |.|.|.:.  ..|:..:.|..:..   ..|.:|    .|.::|....|...:.|
  Fly   329 GYDLVQSAAQHGFPGGFAQPGHFGSQNYYHQDYSKLTIDDFSKLTADSVSKISPSLHLSDNYSKL 393

Mouse   504 RQPTPAVEGA----------VASGALADPATAAADRRASS 533
            ..|:...:.|          ||...|.|.|.|||....:|
  Fly   394 EAPSNWSQAAYHAAANYNAHVAQHQLNDYAAAAAHGNPAS 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ArxNP_031518.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 54..79
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 111..264
Homeodomain 331..387 CDD:459649 39/55 (71%)
OAR 528..546 CDD:461067 0/5 (0%)
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 532..545 0/1 (0%)
gsb-nNP_523862.1 HTH_CRP 20..141 CDD:481199 1/1 (100%)
Homeodomain 183..239 CDD:459649 39/55 (71%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.