Sequence 1: | XP_006525592.1 | Gene: | Apc / 11789 | MGIID: | 88039 | Length: | 2870 | Species: | Mus musculus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001334699.1 | Gene: | Apc2 / 42871 | FlyBaseID: | FBgn0026598 | Length: | 1067 | Species: | Drosophila melanogaster |
Alignment Length: | 1819 | Identity: | 441/1819 - (24%) |
---|---|---|---|
Similarity: | 618/1819 - (33%) | Gaps: | 849/1819 - (46%) |
- Green bases have known domain annotations that are detailed below.
Mouse 337 DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHS 401
Mouse 402 QPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEQGM--DQDKNPMPAPVEHQICPAVCVLMKL 464
Mouse 465 SFDEEHRHAMNELGRKATRGISSQELGQGLSGGLQAIAELLQVDCEMYG-LTNDHYSVTLRRYAG 528
Mouse 529 MALTNLTFGD--VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE 591
Mouse 592 VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLA 656
Mouse 657 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQ 721
Mouse 722 EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLPSLHVRKQKAL 786
Mouse 787 EAELDAQHLSETFDNIDNLSPKASHRSKQRHKQNLYGDYAFDANRHDDSRSDNFNTGNMTVLSPY 851
Mouse 852 LNTTVLPSSSSSRGSLDSSRSEKDRSLERERGIGLSAYHPTTENAGTSSKRGLQITTTAAQIAKV 916
Mouse 917 MEEVSAIHTSQDDRSSASTTEFHCVADDRSAARRSSASHTHSNTYNFTKSENSNRTCSMPYAKVE 981
Mouse 982 YKRSSNDSLNSVTSSDGYGKRGQMKPSVESYSEDDESKFCSYGQYPADLAHKIHSANHMDDNDGE 1046
Mouse 1047 LDTPINYSLKYSDEQLNSGRQSPSQNERWARPKHVIEDEIKQNEQRQARSQNTSYPVYSENTDDK 1111
Mouse 1112 HLKFQPHFGQQECVSPYRSRGTSGSETNRMGSSHAINQNVNQSLCQEDDYEDDKPTNYSERYSEE 1176
Mouse 1177 EQHEEEEERPTNYSIKYNEEKHH--------VDQPIDYSLKYATDISSSQKPSFSFSKNSSAQST 1233
Mouse 1234 KPEHLSPSSE--NTAVPPSNAKRQNQLR-------PSSAQRNGQTQKGTTCKVPSINQETIQTYC 1289
Mouse 1290 VEDTPICFSRCSSLSSLSSADDEIGCDQTTQEADSANTLQTAEVKENDVTRSAEDPATEVPAVSQ 1354
Mouse 1355 NARAKPSRLQASGLSSESTRHNKAVEFSSGAKSPSKSG-------AQTPKSPPEHYVQETPLVFS 1412
Mouse 1413 RCTSVSSLDSFESRSIA----SSVQSEPCSGMVSGIISPSDLPDSPGQTMP--PSRSK------- 1464
Mouse 1465 --TPPPPPQTVQAKREVPKSKVPAAEKRESGPKQTAVNAAVQRVQVLPDVDTLLHFATESTPDGF 1527
Mouse 1528 SCSSSLSALSLDEPFIQKDVELRIMPPVQENDNGNETESEQPEESNENQDKEVEKPDSEKDLLDD 1592
Mouse 1593 SDDDDIEILEECIISAMPTKSSRKAKKLAQTASKLPPPVARKPSQLPVYKLLPAQNRLQAQKHVS 1657
Mouse 1658 FTPGDDVPRVYCVEGTPINFSTATSLSDLTIESPPNELATGDGVRAGIQSGEFEKRDTIPTEGRS 1722
Mouse 1723 TDDAQRGKISSIVT--PDLDDNKAEEGDILAECINSAMPKGKSHKPFRVKKIMDQVQQ------- 1778
Mouse 1779 -ASSTSSGANKNQVDTKKKKPTSPVKPMPQNTEYRTRVRKNTDSKVNVNTEETFSDNKDSKKPSL 1842
Mouse 1843 QTNAKAFNEKLPNNEDRVRGSFALDSPHHYTPIEGTPYCFSRNDSLSSLDFD-DDDVDLSREKAE 1906
Mouse 1907 LRKGKESKDSEAKVTCRPEPNSSQQAASKSQASIKHPANRAQSKPVLQKQPTFPQSSKDGPDRGA 1971
Mouse 1972 ATDEKLQNFAIENTPVCFSRNSSLSSLSDIDQENNNNKESEPIKEAEPANSQGEPSKPQASGYAP 2036
Mouse 2037 KSFHVEDTPVCFSRNSSLSSLSIDSEDD------LLQECISSAMPKKKRPSRLKSESEKQSPRK 2094 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Apc | XP_006525592.1 | Suppressor_APC | 135..215 | CDD:371516 | |
ARM | 348..400 | CDD:214547 | 20/51 (39%) | ||
APC_rep | 401..474 | CDD:376216 | 25/74 (34%) | ||
armadillo repeat | 498..534 | CDD:293788 | 13/36 (36%) | ||
ARM | 538..579 | CDD:214547 | 19/42 (45%) | ||
armadillo repeat | 542..579 | CDD:293788 | 16/36 (44%) | ||
armadillo repeat | 589..621 | CDD:293788 | 15/31 (48%) | ||
armadillo repeat | 629..670 | CDD:293788 | 28/40 (70%) | ||
ARM | 675..715 | CDD:214547 | 28/39 (72%) | ||
armadillo repeat | 679..713 | CDD:293788 | 25/33 (76%) | ||
Arm | 717..755 | CDD:366143 | 19/37 (51%) | ||
armadillo repeat | 721..757 | CDD:293788 | 19/35 (54%) | ||
Arm_APC_u3 | 758..1045 | CDD:374686 | 25/286 (9%) | ||
APC_u5 | 1062..1161 | CDD:374687 | 7/98 (7%) | ||
APC_r | 1283..>1300 | CDD:368672 | 7/16 (44%) | ||
APC_u9 | 1309..1395 | CDD:374689 | 6/92 (7%) | ||
APC_r | 1663..1686 | CDD:368672 | 11/22 (50%) | ||
APC_u13 | 1688..1741 | CDD:374690 | 10/54 (19%) | ||
SAMP | 1742..1763 | CDD:368673 | 5/20 (25%) | ||
APC_u14 | 1772..1865 | CDD:374691 | 16/100 (16%) | ||
APC_u15 | 1899..1973 | CDD:374692 | 8/73 (11%) | ||
SAMP | 2060..2079 | CDD:368673 | 9/24 (38%) | ||
APC_basic | 2251..2596 | CDD:368684 | |||
EB1_binding | 2698..2870 | CDD:368678 | |||
Apc2 | NP_001334699.1 | None | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C167837311 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG2122 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0002986 | |
OrthoInspector | 1 | 1.000 | - | - | mtm8887 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_105450 | |
Panther | 1 | 1.100 | - | - | O | PTHR12607 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R2401 |
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
10 | 9.730 |