DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ap2a2 and AP-1gamma

DIOPT Version :9

Sequence 1:NP_001343997.1 Gene:Ap2a2 / 11772 MGIID:101920 Length:939 Species:Mus musculus
Sequence 2:NP_788891.2 Gene:AP-1gamma / 31842 FlyBaseID:FBgn0030089 Length:982 Species:Drosophila melanogaster


Alignment Length:977 Identity:234/977 - (23%)
Similarity:403/977 - (41%) Gaps:220/977 - (22%)


- Green bases have known domain annotations that are detailed below.


Mouse     1 MPAVSKGDGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFI 65
            ||..::   :|.|   |..||..::...|...:|||.|.|||.|:.:   |...:.:.:.|||:|
  Fly    42 MPTPTR---LRDL---IRQIRAARTAAEERAVVNKECAYIRSTFREE---DSVWRCRNIAKLLYI 97

Mouse    66 FLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGL 130
            .:||:...||.:|.:.|.:|.|:|:|:||||...:|::...::..||.|.:||||.|.....:||
  Fly    98 HMLGYPAHFGQLECLKLTASTRFTDKRIGYLGAMLLLDERQDVHLLITNCLKNDLNSSTQFVVGL 162

Mouse   131 ALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHL 195
            ||..:..:.|.|||...|.|:.:::.:.:|.  :::.|.||..|:.|..|:|:.:  :......|
  Fly   163 ALCTLGAIASPEMARDLASEVERLMKSPNTY--IRKKATLCAFRVIRRVPELMEI--FLPATRSL 223

Mouse   196 LNDQHLGVVTAATSLITTLAQKNPE---EFKTS------VSLAVSRLSRIVTSASTDLQDYTYYF 251
            |::::.|::....:|||.:.:.:.:   .||..      |...|..|..::....:...|.:  .
  Fly   224 LSEKNHGILITGVTLITEMCENSSDTLMHFKKDSGNREIVPNLVRILKNLILGGYSPEHDVS--G 286

Mouse   252 VPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISL 316
            |..|:|.||:||||:.....:..|     :|.:..||.:.....::.|    |..|.:|:|.:..
  Fly   287 VSDPFLQVKILRLLRILGHNDPDA-----SEAMNDILAQVATNTETSK----NVGNTILYETVLS 342

Mouse   317 IIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTER 381
            |:...||..|.|.|.|.||:||.:.:.|:||:||.::.....::.|  ||:.|..|::..|| :.
  Fly   343 IMDIRSEGGLRVLAVNILGRFLLNSDKNIRYVALNTLLRTVHADTS--AVQRHRTTILECLK-DP 404

Mouse   382 DVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTI 446
            |||:|:||::|.:|:.:..|.:.:..|:|.:||.||...:.:....:.:.||:|:....|::||.
  Fly   405 DVSIRRRAMELSFALINAQNIRTMTKELLLFLEKADAEFKAQCSSGMILAAERYSPTTRWHLDTQ 469

Mouse   447 LNLIRIAGDYVSEEVWYRVIQIVINRD-DVQGYAAKTVFEALQ-APACHEN--LVKVGGYILGEF 507
            |:::..||:||.::|....||:|.:.. ..|.|.....:|:|| |..|.:.  |::|..:.:||:
  Fly   470 LSVLIAAGNYVRDDVVSSTIQLVSSSPVPEQTYITNRFWESLQVANHCEDKQPLLQVAVWAIGEY 534

Mouse   508 GNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQL--- 569
            |:          |..:.....:|..   ||.:.|::.|.||:........:.|..|.|.::|   
  Fly   535 GD----------LFMYGANEDEFER---PTESDLIAVYYKFLTSAQVSTTSKQYALVSLAKLSTR 586

Mouse   570 ----------------KNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPERESSI-LAKLK 617
                            .:.:|:||||.||:        |.:........||..|:..:: ::::.
  Fly   587 LQQCVEEIQALITSFGSHLNVDLQQRGVEF--------TQLFGHYKHLRPPLLEKMPAMQISRIS 643

Mouse   618 KKKGPS----------------------------------------------------------- 623
            .:.|.|                                                           
  Fly   644 SQNGESGGGSFDDNSPDVIENGVEGGGGGGHSLIESNMNTLGDNTNILLDLLGSTDLSAGGAGDL 708

Mouse   624 -TVTDLEE-TKRERSIDVNGGPEPV----------------PAST-------------------- 650
             ..|||.. ..::.|.:.|....||                |:||                    
  Fly   709 VAATDLSNAVHKKNSRNANDVVAPVSNNQDLLDLLDLDLSAPSSTTTGAPAGGGGGGGIVALVGD 773

Mouse   651 --------------------------SAASTPSPSADLL----GLGAVPPAPTGPPPSSGGGLLV 685
                                      |:||.|:...||.    ||||.|.|......|:..|.|:
  Fly   774 NNQSSAANMNNMLGGLDLGGFGSGLDSSASIPTNGNDLASMLGGLGAPPAASPSLAASAPVGNLI 838

Mouse   686 DVFSDSASAVAPLAPGSEDNFARFVCKNNG---VLFENQLLQIGLKSEFRQNLGRMFIFYGNKTS 747
            |  ..:.|.:|.|.|.:..|  ..|....|   ...:...|.:.|.|....:..|:::...|.:.
  Fly   839 D--GHAGSLLADLNPTAASN--NVVVPPQGPRLTALDKDGLLVQLVSVRGSDCMRIYMTTTNNSD 899

Mouse   748 TQFLNFTPTLICADDLQTNLNLQ-TKPVDPTVDGGAQVQQVVNIECISDFTEAPVLNIQFRYGGT 811
                |.....:....:|.:..|| ..|....:..|..:.|.:.:...|:.|....|.||:...|.
  Fly   900 ----NTLDQYLLQAAVQRSFQLQMLTPSGSVLPPGGVITQEMRVVATSNATLRMRLRIQYVLDGQ 960

Mouse   812 FQ 813
            .|
  Fly   961 QQ 962

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ap2a2NP_001343997.1 Lipid-binding 5..80 24/74 (32%)