DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RacGAP84C and racgap1.2

DIOPT Version :10

Sequence 1:NP_476704.1 Gene:RacGAP84C / 117503 FlyBaseID:FBgn0045843 Length:384 Species:Drosophila melanogaster
Sequence 2:XP_031748578.1 Gene:racgap1.2 / 733574 XenbaseID:XB-GENE-5952945 Length:594 Species:Xenopus tropicalis


Alignment Length:310 Identity:97/310 - (31%)
Similarity:149/310 - (48%) Gaps:39/310 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 SQSLDSLQDRV-----------DMNPSGCDGLSTDGLDFCSQSHSGLLREHNFKIKSYYYNVGNC 101
            |:.|.||||:.           :|.|        :...:.:::|..|.|.   .|::..     |
 Frog   240 SRPLSSLQDQTPALPQINEEEKEMEP--------EPPPYPTRTHVYLSRT---MIRAEL-----C 288

  Fly   102 VHCRKRIRFAMASLRCRACPLRCHIGC---CRQLTVNCIPQPQIGTKR--GCLSDYAPRVAPMVP 161
            :.|.:::||....|:|:.|.:..|..|   |.::..:.:|......|.  |.|:||||...|.||
 Frog   289 MVCGQKVRFGKMCLKCKDCRILIHPECKDFCPKVCSSALPSHSTNPKNGPGVLADYAPAAPPRVP 353

  Fly   162 ALIVHCVTEIEARGLQQEGLYRVSSTREKCKRLRRKLLRGK-STPHLGNKDTHTLCCCVKDFLRQ 225
            :.:|.||.|||.||..:.|:||:.......|.|::|||:|| ...||..:|.||:|..:|:|.|.
 Frog   354 SQVVQCVNEIEKRGFSERGIYRIPGCDRLVKELKQKLLQGKIKAQHLAKEDVHTVCGALKEFFRT 418

  Fly   226 LVHPLIPIYHRRDFEEATRHEDRLAVEMAVYLAVLELHQAHRDTLAYLMLHWQKIAESPAVRMTV 290
            |..||:.......|.:|....|..........||.:|...:|||||:|:||..::..||..:|..
 Frog   419 LQEPLLTYSLHATFLDAADILDECDGRAETCQAVHDLPAPNRDTLAFLILHLYRVMRSPECKMDK 483

  Fly   291 NNLAVIFAPTLFG------DLDLTLENVVTWQRVLKVLLLMPAGFWSQFL 334
            .||:.||.|||.|      ...:.:::.....:|:.:||.:|..||.|||
 Frog   484 TNLSRIFGPTLVGYSVPNPSPLMIMQDTPRQAKVMSMLLSIPCAFWDQFL 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RacGAP84CNP_476704.1 C1_1 87..139 CDD:395079 11/54 (20%)
RhoGAP_MgcRacGAP 142..330 CDD:239847 69/196 (35%)
racgap1.2XP_031748578.1 EnvC <5..>129 CDD:443969
C1_MgcRacGAP 273..323 CDD:410371 14/57 (25%)
RhoGAP_MgcRacGAP 336..529 CDD:239847 68/192 (35%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.