DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gr28b and Gr22a

DIOPT Version :9

Sequence 1:NP_995642.1 Gene:Gr28b / 117496 FlyBaseID:FBgn0045495 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_722733.1 Gene:Gr22a / 117500 FlyBaseID:FBgn0045501 Length:394 Species:Drosophila melanogaster


Alignment Length:445 Identity:82/445 - (18%)
Similarity:172/445 - (38%) Gaps:86/445 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LCQPLR-----RRFRRFVTAKQLYECLRPVFHVTYIHGLTSFYISCDTKTGKKAIKKTIFGYING 83
            :.||.|     :...||.        :|...:.:::.||  |..:.|::..:....|.:..| ..
  Fly     1 MSQPKRIHRICKGLARFT--------IRATLYGSWVLGL--FPFTFDSRKRRLNRSKWLLAY-GL 54

  Fly    84 IMHIAMFVFAYSLTIYNNCESVASYFFRSR--ITYFGDLMQIVSGFIGVTVIYLTAFVPNHRLER 146
            ::::.:.|.: .|...::..||....|:..  :....:|::::| .|...|.:|..|..:..|..
  Fly    55 VLNLTLLVLS-MLPSTDDHNSVKVEVFQRNPLVKQVEELVEVIS-LITTLVTHLRTFSRSSELVE 117

  Fly   147 CLQKFHTMDVQLQTVGVKIMYSKVLRFSYMVLISMFLVNVLFTGGTFSVLYSSEVAPTMALHFTF 211
            .|.:...:|   :....|:|.|:...|:..| |...||.:|            |:..::.|:|..
  Fly   118 ILNELLVLD---KNHFSKLMLSECHTFNRYV-IEKGLVIIL------------EIGSSLVLYFGI 166

  Fly   212 LIQHTVIAIAIALFSCFTYLVEMRLVMVNKVLK-NLAHQWDTRSLKAVNQKQRSLQCLDSFSMYT 275
            .....|:..|:.:     |:|::.::||  |:. :||..:..|.|..:|.     |.||..|...
  Fly   167 PNSKIVVYEAVCI-----YIVQLEVLMV--VMHFHLAVIYIYRYLWIING-----QLLDMASRLR 219

  Fly   276 IVTKDPAEIIQESMEIHHLICEAAATANKYFTYQLLTIISIAFLIIVFDAYYVLETLLGKSKRES 340
            .......:.||..:.::..:.:........:..|:...::..|.:.:...:.::...:.      
  Fly   220 RGDSVDPDRIQLLLWLYSRLLDLNHRLTAIYDIQVTLFMATLFSVNIIVGHVLVICWIN------ 278

  Fly   341 KFKTVEFVTFFSCQMILYL---------------IAIISIVEGSNRAIKKSEKTGGIVHSLLN-- 388
                   :|.||..:|..|               ||...:.|.:.:      ||..|: .|.|  
  Fly   279 -------ITRFSLLVIFLLFPQALIINFWDLWQGIAFCDLAESTGK------KTSMIL-KLFNDM 329

  Fly   389 KTKSAEVKEKLQQFSMQLMHLKINFTAAGLFNIDRTLYFTISGALTTYLIILLQF 443
            :....|.:.::.:|::...|.::.....||.:|:..:.|.:......|::.|:||
  Fly   330 ENMDQETERRVTEFTLFCSHRRLKVCHLGLLDINYEMGFRMIITNILYVVFLVQF 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gr28bNP_995642.1 7tm_7 45..443 CDD:285581 75/417 (18%)
Gr22aNP_722733.1 7tm_7 19..388 CDD:285581 77/419 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR21143
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.