DRSC/TRiP Functional Genomics Resources

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Protein Alignment Irbp and xrcc6

DIOPT Version :9

Sequence 1:NP_536773.1 Gene:Irbp / 117419 FlyBaseID:FBgn0011774 Length:631 Species:Drosophila melanogaster
Sequence 2:NP_001005700.1 Gene:xrcc6 / 448213 XenbaseID:XB-GENE-970899 Length:611 Species:Xenopus tropicalis


Alignment Length:671 Identity:179/671 - (26%)
Similarity:308/671 - (45%) Gaps:102/671 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSTWN----PENDVDLLSGSEDEEDVSMKRDYHGREAILFVVDAN---LQTAGVERLLEALNI-- 56
            |:.|.    .|.|.|.....|.|.|..:.| :.||::::|::||:   .::.|.|.....|.:  
 Frog     1 MNEWGEYFVKEEDEDDEEQEEGERDAGVFR-FAGRDSLIFLIDASKPMFESTGDELTPFDLTLQC 64

  Fly    57 IRTAFISGLLVNDKDLIGLIFANTKHSPPPLEASALDNIVMPDNCAVFLPLRQLTKPIVEHYLEF 121
            ||:.:.|.::.:|.||:.::|..|:.|               :||..|..|      .|.|.|:.
 Frog    65 IRSVYASKIISSDHDLLSVVFFGTRES---------------NNCDPFKHL------CVLHDLDT 108

  Fly   122 MGGVETQFADVYGLAEPDGR----------GRFDL--MIRLCIEMLEKCGKKLNNAKIAYVTDVR 174
            .|.......|.|  .|..||          |.|.|  .:.||..:......|:::.:|...|:..
 Frog   109 PGAKRILDLDKY--KEEKGRALFRDTIGCGGDFSLGEALWLCSNLFSNVKVKMSHKRIMLFTNED 171

  Fly   175 EPHPSNSNHFQAALQKASDLE--GKEFEFHVIPMVDDFDYEPFYKEFITLSRAIELDAFQVPDAQ 237
            .||.::....:.|..||.||.  |...:...:...:.||...||::.:..:...:| ..|...::
 Frog   172 NPHANDQAKAKQARAKAEDLREMGIFLDLMHLEKPEGFDISLFYRDIVNTAEDQDL-GVQFKASE 235

  Fly   238 MLREILSDRKLKQDFLRRCLGHFSFYLGPNLSMSVQYYNYFQRRAYPRKVQILRRDNSVVRTKRV 302
            .|.::|...:.| :..:|.|...:..|||::.::|..||..|:...|..|::.|..|..|:||..
 Frog   236 KLDDLLKKVRAK-EAKKRALARLTLKLGPDVGLTVGIYNLVQKAVKPPTVKLYRESNEPVKTKTR 299

  Fly   303 ITVQKQKDDGSQDIEHEYQIKVTGGWYTCNVGERDLRISMDQLNRVRNLHKPQMMLLGFKHRSSL 367
            |.   ..:.||..:..:.:...|       .|.|.:.:..|:..:::...:|.::|:|||..:.|
 Frog   300 IF---HSNTGSLLLPSDTKRSQT-------YGNRQIVLEKDETEQLKRFDEPSLVLIGFKPITFL 354

  Fly   368 PEVSYIKPANFMYPDDQSIIGSKRLFRALWERCLVRDKIAICLFMCKRKSIPRYVALVPVEAPDN 432
            .:..:.:||.|:||::..|.||..||.||..|||.:..:|||.:..:|.:.||:|||||.:  :.
 Frog   355 KKHHFTRPAQFIYPEESLINGSTTLFHALLLRCLAQQVMAICRYTPRRNTPPRFVALVPQD--EE 417

  Fly   433 GEDKNYRSLLCGDGFKIVYLPEAKHIRHLDLQDWNNTENTADEQKVEFFQKIIKKLRVDYQPNLI 497
            .:|:|.:|.  ..||.:|:||.|..||.:|..:    :.||:|::|:..::|:.|||.:::.:..
 Frog   418 LDDQNIQSK--PPGFNLVFLPFADDIRKIDPPE----KITANEEQVDKMKEIVHKLRFNFRSDSF 476

  Fly   498 NDPSLDALQANLLALSLDFSTDTKGLDNLL--DTSQQDKRIEKLLPDYE--MFAPEAEPHKKRAA 558
            .:|.|.....||.||:||. .:.:.:::|.  .....|:|:..|:.:::  ::.|...|..| |.
 Frog   477 ENPVLQQHFRNLEALALDM-LEPEPIEDLTLPKVEMIDRRLGTLVEEFKELVYPPGYNPEGK-AV 539

  Fly   559 KSTTAGAS---GPKMAKID----DDQLKEFEFVKSLNKDEALT------SCTAAQLHFILQHHFD 610
            |...||.|   ..|.||.|    :|.|:.:....:|.|   ||      :|...:|         
 Frog   540 KRKQAGDSDSRAEKKAKADISISEDDLRSYVDKGTLGK---LTVPVLKEACRGYKL--------- 592

  Fly   611 VTMPKSSKKAKLVAKIEELHK 631
                |.|||.:||..:.|..|
 Frog   593 ----KGSKKQELVDSLVEYFK 609

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IrbpNP_536773.1 Ku_N 33..256 CDD:367627 53/241 (22%)
KU70 255..546 CDD:238407 87/294 (30%)
HeH 593..624 CDD:338564 9/36 (25%)
xrcc6NP_001005700.1 Ku_C 27..609 CDD:330205 170/643 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 105 1.000 Domainoid score I6612
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H37483
Inparanoid 1 1.050 175 1.000 Inparanoid score I3943
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D402798at2759
OrthoFinder 1 1.000 - - FOG0005016
OrthoInspector 1 1.000 - - oto104385
Panther 1 1.100 - - LDO PTHR12604
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R7418
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
99.190

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