DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp68C and Tsp42Ei

DIOPT Version :9

Sequence 1:NP_729926.1 Gene:Tsp68C / 117407 FlyBaseID:FBgn0043550 Length:362 Species:Drosophila melanogaster
Sequence 2:NP_001260756.1 Gene:Tsp42Ei / 35618 FlyBaseID:FBgn0033130 Length:229 Species:Drosophila melanogaster


Alignment Length:223 Identity:59/223 - (26%)
Similarity:89/223 - (39%) Gaps:68/223 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KFVLNLCNFLFLICGLLLVVSGLYIFSDNKRILLSRLLAASSDRLSSLPQPLLFYIALGVAIA-G 71
            |.||.|.||:|.:.||.|:..|::.           |::|:.:.:|     :...:|.|:.|| |
  Fly     9 KHVLLLLNFVFSVLGLALIAFGIFF-----------LISAAENAVS-----IGKNVAGGLIIALG 57

  Fly    72 FVATLAAVVGFWASCLHTYCFLTIYFLSVVVLLLTESVLCLAITLWPHCLGISLDETQMVRSLQS 136
            .|..:.|:.|..|:.......|.||..:||:|:|.:.:.          ||:|...|:...|...
  Fly    58 VVILIIAIFGCLAAIHEAPVRLLIYVGAVVLLILAQLIF----------LGMSSHGTKDGISGSI 112

  Fly   137 NYGV----PGQEQFTNALDLAQVRFGCCGMRSSLDYDTSLWRLQGYGQRNWPVPLSCC------- 190
            |.|.    ..:...|.||...:....|||:.||.||    |.:. :|     :|.|||       
  Fly   113 NEGFDRLWESERNQTGALSYYESWLQCCGVNSSEDY----WIIH-HG-----IPSSCCPESKCMD 167

  Fly   191 -------------FLKNAGHSMAYLDPK 205
                         |:|       |||.|
  Fly   168 TPSRVFKTGCKAAFVK-------YLDDK 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp68CNP_729926.1 Tetraspannin 8..267 CDD:278750 59/223 (26%)
tetraspanin_LEL 117..241 CDD:239401 29/113 (26%)
Tsp42EiNP_001260756.1 Tetraspannin 7..217 CDD:278750 59/223 (26%)
DUF373 <17..>101 CDD:299895 27/109 (25%)
tetraspanin_LEL 104..189 CDD:239401 26/102 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19282
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.