DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment betaTub65B and Tubb4a

DIOPT Version :10

Sequence 1:NP_729172.1 Gene:betaTub65B / 117406 FlyBaseID:FBgn0052396 Length:462 Species:Drosophila melanogaster
Sequence 2:NP_543158.1 Gene:Tubb4a / 29213 RGDID:619730 Length:444 Species:Rattus norvegicus


Alignment Length:458 Identity:240/458 - (52%)
Similarity:318/458 - (69%) Gaps:20/458 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MREIVTLQIGGAGNAIGDSFWHVISHEHGVDYASGRFGGTSPLQLERINVFFNATASKRFYARTI 65
            |||||.||.|..||.||..||.|||.|||:| .:|.:.|.|.||||||||::|......:..|.:
  Rat     1 MREIVHLQAGQCGNQIGAKFWEVISDEHGID-PTGTYHGDSDLQLERINVYYNEATGGNYVPRAV 64

  Fly    66 LIDTEASTIQRLNAS--SQLYRPENFVAGSESAGNNFARGYHTDGAAILDQVLENTRREVESVDS 128
            |:|.|..|:..:.:.  .|::||:|||.|...||||:|:|::|:||.::|.||:..|:|.||.|.
  Rat    65 LVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDC 129

  Fly   129 LQGFQLLHSIGGGTGSGLTSLIMEALVEQYPDNLLCNYVTIPSPNMSQVVVEPYNALLSTPALVN 193
            ||||||.||:|||||||:.:|::..:.|::||.::..:..:|||.:|..|||||||.||...||.
  Rat   130 LQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVE 194

  Fly   194 NSHLTFCLDNEALFQICNRNLKLKMSGYEHINHIVALTMSGITTCLRFPGQLNAGLRKIYVNMVP 258
            |:..|:|:|||||:.||.|.|||....|..:||:|:.||||:||||||||||||.|||:.|||||
  Rat   195 NTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVP 259

  Fly   259 FPRLHFLIPGFAPLVTCKQQQFSKGTVSELVQQIFYSNNLLCAIDLRKGKLLTAAGIFRGRMSPR 323
            ||||||.:||||||.:...||:...||.||.||:|.:.|::.|.|.|.|:.||.|.:||||||.:
  Rat   260 FPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMK 324

  Fly   324 EVDQLMTGVRNKNINNFVDWIPNNIKTAICDIPPRGLKMSATFIGNTTAIQTLFQRLLDASMSML 388
            |||:.|..|::||.:.||:|||||:|||:||||||||||:||||||:||||.||:|:.:...:|.
  Rat   325 EVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMF 389

  Fly   389 RRKAHLHWYTGEGMEEQEFQDAQQELQAIIDDYRSSAEGEDSGGGGGGGGGRSGSAESG--EEEA 451
            ||||.|||||||||:|.||.:|:..:..::.:|:..               :..:||.|  ||||
  Rat   390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY---------------QDATAEEGEFEEEA 439

  Fly   452 TPE 454
            ..|
  Rat   440 EEE 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
betaTub65BNP_729172.1 beta_tubulin 2..425 CDD:276956 231/424 (54%)
Tubb4aNP_543158.1 PLN00220 1..427 CDD:215107 232/441 (53%)

Return to query results.
Submit another query.