DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prt and slc18a3

DIOPT Version :9

Sequence 1:NP_001097887.1 Gene:prt / 117368 FlyBaseID:FBgn0043005 Length:602 Species:Drosophila melanogaster
Sequence 2:NP_001072859.1 Gene:slc18a3 / 780320 XenbaseID:XB-GENE-965085 Length:524 Species:Xenopus tropicalis


Alignment Length:575 Identity:156/575 - (27%)
Similarity:255/575 - (44%) Gaps:149/575 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 RCLIAVIVYLALLLDNMLLTVIVPILPDYLASLEADTSSAVVLSLEDTSSFSKLGYRSGESPGGG 109
            |.:|.:||.:||.|||||..|||||:|||:.:|.||...|                         
 Frog    39 RRIILIIVCVALFLDNMLYMVIVPIIPDYIQNLRADREHA------------------------- 78

  Fly   110 HPQLYISKHPIPGKSMVNFTLLQLSTEATTTTTSIATTTNSPHNSTSMQSPPKLTVGQSGGTNVT 174
                         ||:                                                 
 Frog    79 -------------KSI------------------------------------------------- 81

  Fly   175 GIGHKSRNRKLASGHPPTHDNSSNDNSNKELTL------TQENGSIGLLLAMKALVQLIFNPIVG 233
                                |||:...||...:      ..|:..||:|.|.||::||:.||:.|
 Frog    82 --------------------NSSSQYRNKSFAIRPQYPAENEDMQIGVLFASKAILQLLINPLSG 126

  Fly   234 NASSKFGYRLPIVVGTFFLLLSSLVFTVGESYWALLVARAVQGVGSACINICGMSLVAQHYPEEA 298
            ....:.||.:|:::|...|..|:::|...|:|..|.|||::||:|||..:..|::::|..|.|||
 Frog   127 TFIDRVGYDIPLLIGLVVLFFSTVIFAFAENYATLFVARSLQGLGSAFADTSGIAMIADTYTEEA 191

  Fly   299 RRSKVMGIILGSIALGVLLGYPFGGILYDLMGKSAPFIILSTLMFLSLGLQLLTMDLTVQPEVVV 363
            .|||.:||.|..|:.|.|:..|||||||..:||..||::|:::..:. |:.||   |.::|   .
 Frog   192 ERSKALGIALAFISFGSLVAPPFGGILYQFVGKRMPFLVLASIALID-GVLLL---LVIKP---F 249

  Fly   364 EDR---------PKWRSLLECKMILAIVLAIWFSTSTMAMLEPCLPIWLIQYLKPNKWQLGTVFI 419
            .:|         |..|.::: ..|..:..|:......:|.|||.:..|:...:..::||:|..::
 Frog   250 TNRTRANMPIGTPIHRLMID-PYIAVVAGALTTCNIPLAFLEPTIANWMKTTMDASEWQMGLTWL 313

  Fly   420 PDSVGYFVGTNFFGSIA--YKYGQVKVSCISLLLVGVASILIPSATTVAQLLLPHFALGLGIGVI 482
            |....:.:|......:|  |.:.|.....|.::::|.:|..:|:.....:|::|...:..||.::
 Frog   314 PAFFPHVLGVYITVKLAANYPHYQWFYGAIGMVIIGASSCTVPACKNFWELIVPLCGICFGIALV 378

  Fly   483 DAALVPLLATFVDATLAQEDQGEGSSSMSSYGTVYAIQQTSVSLAYCLAPLIGGELAQTFGFAWL 547
            |.||:|.||..||.           ..:|.||:||||...|..:||.|.|::..::..|.||..|
 Frog   379 DTALLPTLALLVDV-----------RHVSVYGSVYAIADISYCVAYALGPVVASQIVHTTGFTQL 432

  Fly   548 MRIVGIFNMIYGPILVYLHQKYDPKALREQHNDMLLQSSGRGSRYKQLYNSMDVE 602
            ...:|:.|::|.|.|::|......|....:.| :||:...:|     ||:::.:|
 Frog   433 NLGMGLANVLYAPALLFLRNVCQMKPSHSERN-ILLEEGPKG-----LYDTIKME 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prtNP_001097887.1 MFS 212..565 CDD:119392 116/363 (32%)
MFS_1 212..532 CDD:284993 106/330 (32%)
slc18a3NP_001072859.1 MFS_SLC18A3_VAChT 43..451 CDD:340941 145/533 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG59108
OrthoDB 1 1.010 - - D406900at33208
OrthoFinder 1 1.000 - - FOG0000700
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.930

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