DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prt and slc18a1

DIOPT Version :9

Sequence 1:NP_001097887.1 Gene:prt / 117368 FlyBaseID:FBgn0043005 Length:602 Species:Drosophila melanogaster
Sequence 2:XP_021334159.1 Gene:slc18a1 / 571483 -ID:- Length:523 Species:Danio rerio


Alignment Length:526 Identity:171/526 - (32%)
Similarity:275/526 - (52%) Gaps:86/526 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 LIAVIVYLALLLDNMLLTVIVPILPDYLASLEADTSSAVVLSLEDTSSFSKLGYRSGESPGGGHP 111
            |:..:|.:|||||||||||:|||:|.:|.:.|                     :::.::|    |
Zfish    10 LVLAVVCVALLLDNMLLTVVVPIIPAFLYATE---------------------HQAQKNP----P 49

  Fly   112 QLYISKHPIPGKSMVNFTLLQL-STEATTTTTSIATTTNSPHNSTSMQSPPKLTVGQSGGTNVTG 175
            ......||      .|.:||.| :|....|:.|:..|..|..:||:          ::.|.|   
Zfish    50 TTPFEAHP------TNTSLLSLYNTTTYNTSVSLNFTNFSSASSTN----------ENLGVN--- 95

  Fly   176 IGHKSRNRKLASGHPPTHDNSSNDNSNKELT--LTQENGSIGLLLAMKALVQLIFNPIVGNASSK 238
                               :||.|...||.:  |..||..:|||.|.||:|||:.||.||..:::
Zfish    96 -------------------SSSADYGCKEDSDFLEGENVKVGLLFASKAMVQLLVNPFVGPLTNR 141

  Fly   239 FGYRLPIVVGTFFLLLSSLVFTVGESYWALLVARAVQGVGSACINICGMSLVAQHYPEEARRSKV 303
            .||.:|:..|...:.:|:::|....:|..|..||::||:||:...:.|:.::|..|.:::.|...
Zfish   142 IGYHIPMFAGFVIMFVSTIMFAFSGTYTLLFFARSLQGIGSSFSTVAGLGMLASVYTDDSERGIA 206

  Fly   304 MGIILGSIALGVLLGYPFGGILYDLMGKSAPFIILSTLMFLSLGLQLLTMDLTVQPEVV----VE 364
            |||.||.:|:|||:|.|||.|:|:.:.||:||::|:.|......|||..:    ||..:    :|
Zfish   207 MGIALGGLAMGVLIGAPFGSIMYEFVSKSSPFLVLAFLAMFDGALQLCIL----QPSKISPTSME 267

  Fly   365 DRPKWRSLLECKMILAIVLAIWFSTSTMAMLEPCLPIWLIQYLKPNKWQLGTVFIPDSVGYFVGT 429
            ..|.: .||:...||....::.|:...:|:|||.||||::|.:...|||||..|:|.||.|.:||
Zfish   268 GTPLF-ILLKDPYILISAGSLCFANMGVAVLEPTLPIWMMQTMCAPKWQLGVAFLPASVSYLIGT 331

  Fly   430 NFFGSIAYKYGQVKVSCISLLLVGVASILIPSATTVAQLLLPHFALGLGIGVIDAALVPLLATFV 494
            |.||.:|.|.|:...|.:.:.:||::.:.:|.|..:..|:.|:..||..:|::|.::..::...|
Zfish   332 NLFGILANKMGRWLCSMVGMFIVGISLLCVPFAKNLYGLIGPNGGLGFAVGMVDTSMFAIMGYLV 396

  Fly   495 DATLAQEDQGEGSSSMSSYGTVYAIQQTSVSLAYCLAPLIGGELAQTFGFAWLMRIVGIFNMIYG 559
            |.           ..:|.||:||||...::.:.:.:.|..||.|.:|.||..||.|:||.|::|.
Zfish   397 DI-----------RHVSVYGSVYAIADVALCVGFAVGPSTGGALVRTIGFPNLMVIIGIINILYA 450

  Fly   560 PILVYL 565
            |:..:|
Zfish   451 PLCFFL 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prtNP_001097887.1 MFS 212..565 CDD:119392 126/356 (35%)
MFS_1 212..532 CDD:284993 111/323 (34%)
slc18a1XP_021334159.1 MFS_1 117..423 CDD:311564 111/321 (35%)
2_A_01_02 118..259 CDD:273318 56/144 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3764
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG59108
OrthoDB 1 1.010 - - D406900at33208
OrthoFinder 1 1.000 - - FOG0000700
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23506
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.930

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