DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prt and slc18a2

DIOPT Version :9

Sequence 1:NP_001097887.1 Gene:prt / 117368 FlyBaseID:FBgn0043005 Length:602 Species:Drosophila melanogaster
Sequence 2:NP_001243154.1 Gene:slc18a2 / 553304 ZFINID:ZDB-GENE-080514-1 Length:515 Species:Danio rerio


Alignment Length:575 Identity:191/575 - (33%)
Similarity:304/575 - (52%) Gaps:100/575 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 NRCLIAVIVYLALLLDNMLLTVIVPILPDYLASLEADTSSAV----VLSLEDTSSFSKLGYRSGE 104
            :|.||.:||::|||||||||||:|||:|.||.:::.:.:..|    :..|..:|:|..:      
Zfish    22 SRRLILLIVFIALLLDNMLLTVVVPIIPSYLYTVDDEAAQMVKNHSMTPLSPSSTFQSI------ 80

  Fly   105 SPGGGHPQLYISKHPIPGKSMVNFTLLQLSTEATTTTTSIATTTNSPHNSTSMQSPPKLTVGQSG 169
                  ..||.:...:.|.|.      |:||..   ..|:|.|..||.|.:..            
Zfish    81 ------VSLYDNTTRVTGFSP------QMSTAG---PMSLAPTFVSPQNQSDC------------ 118

  Fly   170 GTNVTGIGHKSRNRKLASGHPPTHDNSSNDNSNKELTLTQENGSIGLLLAMKALVQLIFNPIVGN 234
                                 |..|:.          |..||..:|||.|.||.||||.||.:|.
Zfish   119 ---------------------PKADDQ----------LLNENVKVGLLFASKATVQLITNPFIGP 152

  Fly   235 ASSKFGYRLPIVVGTFFLLLSSLVFTVGESYWALLVARAVQGVGSACINICGMSLVAQHYPEEAR 299
            .:::.||::|:..|...:.:|:::|....||..|.:||::|||||:|.::.||.::|..|.::..
Zfish   153 LTNRIGYQIPMFAGFCIMFVSTIMFAFSSSYTLLFLARSLQGVGSSCSSVAGMGMLASVYTDDEE 217

  Fly   300 RSKVMGIILGSIALGVLLGYPFGGILYDLMGKSAPFIILSTLMFLSLGLQLLTMDLTVQPEVVVE 364
            |...:||.||.:|:|||:|.|||.::|:.:||:|||:||:.|..|...|||..:    ||..|..
Zfish   218 RGNAIGIALGGLAMGVLVGPPFGSVMYEFVGKTAPFLILAVLAVLDGALQLFVL----QPSKVEP 278

  Fly   365 DRPKWRS---LLECKMILAIVLAIWFSTSTMAMLEPCLPIWLIQYLKPNKWQLGTVFIPDSVGYF 426
            :..|..|   |::...||....:|.|:...:|||||.||||:::.:.|.|||||..|:|.|:.|.
Zfish   279 ESQKGTSLITLMKDPYILIAAGSICFANMAIAMLEPALPIWMMETMCPRKWQLGIAFVPASISYL 343

  Fly   427 VGTNFFGSIAYKYGQVKVSCISLLLVGVASILIPSATTVAQLLLPHFALGLGIGVIDAALVPLLA 491
            :|||.|..:|:|.|:...|.|.:||||::.:.:|.|..:..|::|:|.:|..||::|::::|::.
Zfish   344 IGTNIFAVLAHKMGRWLCSLIGMLLVGISILCVPLAKDIYGLIVPNFGVGFAIGMVDSSMMPIMG 408

  Fly   492 TFVDATLAQEDQGEGSSSMSSYGTVYAIQQTSVSLAYCLAPLIGGELAQTFGFAWLMRIVGIFNM 556
            ..||.           ..:|.||:||||...:..:.:.|.|..||.:|::.||.|||.|:|:.::
Zfish   409 YLVDL-----------RHVSVYGSVYAIADVAFCMGFALGPSAGGAIARSIGFPWLMTIIGLVDI 462

  Fly   557 IYGPILVYLHQKYDPKALREQHNDMLLQS---------SGRGSRYKQLYNSMDVE 602
            ::.|:..:|.   :|.| .|:...:|:.|         |.:||.| |:.:..|.|
Zfish   463 MFAPLCFFLR---NPPA-NEEKMAILMDSNCSMKTRSYSTQGSSY-QMGDDFDPE 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prtNP_001097887.1 MFS 212..565 CDD:119392 134/355 (38%)
MFS_1 212..532 CDD:284993 122/322 (38%)
slc18a2NP_001243154.1 MFS_1 132..438 CDD:284993 122/320 (38%)
2_A_01_02 133..274 CDD:273318 61/144 (42%)
MFS 295..>472 CDD:119392 68/187 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3764
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG59108
OrthoDB 1 1.010 - - D406900at33208
OrthoFinder 1 1.000 - - FOG0000700
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23506
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.930

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