DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prt and unc-17

DIOPT Version :9

Sequence 1:NP_001097887.1 Gene:prt / 117368 FlyBaseID:FBgn0043005 Length:602 Species:Drosophila melanogaster
Sequence 2:NP_001379838.1 Gene:unc-17 / 24105312 WormBaseID:WBGene00006756 Length:532 Species:Caenorhabditis elegans


Alignment Length:570 Identity:154/570 - (27%)
Similarity:241/570 - (42%) Gaps:138/570 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 SSNRCLIAVIVYLALLLDNMLLTVIVPILPDYLASLEADTSSAVVLSLEDTSSFSKLGYRSGESP 106
            :..:|:: |||.:||||||||..|||||:|.||..:.                            
 Worm    28 NQKKCVL-VIVSIALLLDNMLYMVIVPIIPKYLRDIH---------------------------- 63

  Fly   107 GGGHPQLYISKHPIPGKSMVNFTLLQLSTEATTTTTSIATTTNSPHNSTSMQSPPKLTVGQSGGT 171
                                |:.:                |....||.||..:.....|.:.|| 
 Worm    64 --------------------NYQV----------------TFEGYHNETSQLANGTYLVREVGG- 91

  Fly   172 NVTGIGHKSRNRKLASGHPPTHDNSSNDNSNKELTLTQENGSIGLLLAMKALVQLIFNPIVGNAS 236
                                            .:....|...:|.|.|.|||:|:..||..|...
 Worm    92 --------------------------------RINFLDEELELGWLFASKALLQIFVNPFSGYII 124

  Fly   237 SKFGYRLPIVVGTFFLLLSSLVFTVGESYWALLVARAVQGVGSACINICGMSLVAQHYPEEARRS 301
            .:.||.:|:::|...:..|:.:|.:|:||..||.||::||.|||..:..|::::|..:.||..||
 Worm   125 DRVGYEIPMILGLCTMFFSTAIFALGKSYGVLLFARSLQGFGSAFADTSGLAMIADRFTEENERS 189

  Fly   302 KVMGIILGSIALGVLLGYPFGGILYDLMGKSAPFIILSTLMFLSLGLQLLTMDLTVQPE------ 360
            ..:||.|..|:.|.|:..|||.:||.|.||..||:|||   |:.|. ..:.:.:.:.|.      
 Worm   190 AALGIALAFISFGCLVAPPFGSVLYSLAGKPVPFLILS---FVCLA-DAIAVFMVINPHRRGTDS 250

  Fly   361 --VVVEDRPKWRSLLECKMILAIVLAIWFSTSTMAMLEPCLPIWLIQYLKPNK-WQLGTV----F 418
              ..|:..|.||..:: ..|.....|:..:..::|.|||.:..|:.:.:.... |.:|.:    |
 Worm   251 HGEKVQGTPMWRLFMD-PFIACCSGALIMANVSLAFLEPTITTWMSEMMPDTPGWLVGVIWLPPF 314

  Fly   419 IPDSVGYFVGTNFFGSIAYKYGQVKVSCISLLLVGVASILIPSATTVAQLLLPHFALGLGIGVID 483
            .|..:|.:|......  |:.:....::.:.|.:.|:|...||..|:|.||::|...:..||.:||
 Worm   315 FPHVLGVYVTVKMLR--AFPHHTWAIAMVGLAMEGIACFAIPYTTSVMQLVIPLSFVCFGIALID 377

  Fly   484 AALVPLLATFVDATLAQEDQGEGSSSMSSYGTVYAIQQTSVSLAYCLAPLIGGELAQTFGFAWLM 548
            .:|:|:|...||           :..:|.||:||||...|.||||...|:|.|.:...:||..|.
 Worm   378 TSLLPMLGHLVD-----------TRHVSVYGSVYAIADISYSLAYAFGPIIAGWIVTNWGFTALN 431

  Fly   549 RIVGIFNMIYGPILVYLHQKYDPKALREQHNDMLLQSSGRGSRYKQLYNS 598
            .|:...|:.|.|:|.         .||:.|:...|.:.|..:...||.:|
 Worm   432 IIIFATNVTYAPVLF---------LLRKVHSYDTLGAKGDTAEMTQLNSS 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prtNP_001097887.1 MFS 212..565 CDD:119392 116/365 (32%)
MFS_1 212..532 CDD:284993 105/332 (32%)
unc-17NP_001379838.1 MFS_SLC18A3_VAChT 34..449 CDD:340941 145/539 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG59108
OrthoDB 1 1.010 - - D406900at33208
OrthoFinder 1 1.000 - - FOG0000700
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.930

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