DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prt and Slc18a1

DIOPT Version :9

Sequence 1:NP_001097887.1 Gene:prt / 117368 FlyBaseID:FBgn0043005 Length:602 Species:Drosophila melanogaster
Sequence 2:NP_694694.1 Gene:Slc18a1 / 110877 MGIID:106684 Length:521 Species:Mus musculus


Alignment Length:562 Identity:183/562 - (32%)
Similarity:286/562 - (50%) Gaps:89/562 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 VQLNAPGRRSSTPSGANGSSNRCLIAVIVYLALLLDNMLLTVIVPILPDYLASLEADTSSAVVLS 88
            |.|.||.|...     .|..:|.|:.|:|::|||||||||||:|||:|.:|.:.|          
Mouse     4 VVLGAPQRLLK-----EGRQSRKLVLVVVFVALLLDNMLLTVVVPIVPTFLYATE---------- 53

  Fly    89 LEDTSSFSKLGYRSGESPGGGHPQLYISKHPIPGKSMVNFTLLQ---LSTEATTTTTSIATTTNS 150
            .:|                                  :|.:||:   :|::...|:.:.:||.:.
Mouse    54 FKD----------------------------------INSSLLRGPSVSSQQALTSPAFSTTFSF 84

  Fly   151 PHNST-SMQSPPKLTVGQSGGT---NVTGIGHKSRNRKLASGHPPTHDNSSNDNSNKELTLTQEN 211
            ..|:| :::......|....||   .||..|...:|..|....                .|.:||
Mouse    85 FDNTTMTVEEHVPFRVAWINGTIPPPVTEAGSVPKNNCLQGIE----------------FLEEEN 133

  Fly   212 GSIGLLLAMKALVQLIFNPIVGNASSKFGYRLPIVVGTFFLLLSSLVFTVGESYWALLVARAVQG 276
            ..||:|.|.|||:||:.||.||..:::.||.:|:.||...:.||:|:|....:|..|.|||.:||
Mouse   134 VRIGILFASKALMQLLVNPFVGPLTNRIGYHIPMFVGFMIMFLSTLMFAFSGTYALLFVARTLQG 198

  Fly   277 VGSACINICGMSLVAQHYPEEARRSKVMGIILGSIALGVLLGYPFGGILYDLMGKSAPFIILSTL 341
            :||:..::.|:.::|..|.:...|.:.|||.||.:|||:|:|.|||.::|:.:|||:||:||:.|
Mouse   199 IGSSFSSVAGLGMLASVYTDNYERGRAMGIALGGLALGLLVGAPFGSVMYEFVGKSSPFLILAFL 263

  Fly   342 MFLSLGLQL-LTMDLTVQPEVVVEDRPKWRSLLECKMILAIVLAIWFSTSTMAMLEPCLPIWLIQ 405
            ..|...||. :.....|.||..:  .....:||:...||....:|..:...:|:|||.||||::|
Mouse   264 ALLDGALQFCILWPSKVSPESAM--GTPLLTLLKDPYILVAAGSICLANMGVAILEPTLPIWMMQ 326

  Fly   406 YLKPNKWQLGTVFIPDSVGYFVGTNFFGSIAYKYGQVKVSCISLLLVGVASILIPSATTVAQLLL 470
            .:...:||||..|:|.||.|.:|||.||.:|.|.|:...|.:.::.||::.:.:|.|..:..|:.
Mouse   327 TMCSPEWQLGLAFLPASVAYLIGTNLFGVLANKMGRWLCSLVGMVAVGISLLCVPLAHNIFGLIG 391

  Fly   471 PHFALGLGIGVIDAALVPLLATFVDATLAQEDQGEGSSSMSSYGTVYAIQQTSVSLAYCLAPLIG 535
            |:..||..||::|::|:|::...||.           ...|.||:||||...:..:.:.:.|..|
Mouse   392 PNAGLGFAIGMVDSSLMPIMGYLVDL-----------RHTSVYGSVYAIADVAFCVGFAIGPSTG 445

  Fly   536 GELAQTFGFAWLMRIVGIFNMIYGPILVYLHQKYDPKALREQ 577
            |.:....||.|||.|:|..|:||.|:..:|.   :|.|..|:
Mouse   446 GVIVPVIGFPWLMVIIGTINIIYAPLCCFLQ---NPPAKEEE 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prtNP_001097887.1 MFS 212..565 CDD:119392 131/353 (37%)
MFS_1 212..532 CDD:284993 117/320 (37%)
Slc18a1NP_694694.1 MFS_SLC18A1_2_VAT1_2 127..475 CDD:340942 134/376 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3764
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG59108
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000700
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23506
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.920

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