DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prt and LOC100496053

DIOPT Version :9

Sequence 1:NP_001097887.1 Gene:prt / 117368 FlyBaseID:FBgn0043005 Length:602 Species:Drosophila melanogaster
Sequence 2:XP_002932792.2 Gene:LOC100496053 / 100496053 -ID:- Length:494 Species:Xenopus tropicalis


Alignment Length:563 Identity:174/563 - (30%)
Similarity:274/563 - (48%) Gaps:105/563 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 LIAVIVYLALLLDNMLLTVIVPILPDYLASLEADTSSAVVLSLE-----DTSSFSK--LGYRSGE 104
            |:.|:|:|||||||:|||::||::||||...|....:||...:.     |:|||..  |.||..|
 Frog    28 LVLVVVFLALLLDNLLLTIVVPVIPDYLYESEFVNKTAVEAKMSSIPAPDSSSFLSRLLYYRYNE 92

  Fly   105 SPGGGHPQLYISKHPIPGKSMVNFTLLQLSTEATTTTTSIATTTNSPHNSTS--MQSPPKLTVGQ 167
                   .|:..:|                                 .|||.  ::.|.:     
 Frog    93 -------LLFSDEH---------------------------------ENSTKGLLKEPCR----- 112

  Fly   168 SGGTNVTGIGHKSRNRKLASGHPPTHDNSSNDNSNKELTLTQENGSIGLLLAMKALVQLIFNPIV 232
                       |..|                       .|..||..:|||:|.|::|.::.||||
 Frog   113 -----------KDTN-----------------------FLRDENVPVGLLIASKSMVHILVNPIV 143

  Fly   233 GNASSKFGYRLPIVVGTFFLLLSSLVFTVGESYWALLVARAVQGVGSACINICGMSLVAQHYPEE 297
            ...:::.||.||:..|...:|:|..:|..|.||..||:||.:||:||:...:.|:.:||..|.::
 Frog   144 SLFTNRVGYGLPMFFGFLIMLMSIFMFAFGGSYVFLLLARMLQGIGSSFTVVAGLGMVASIYTDD 208

  Fly   298 ARRSKVMGIILGSIALGVLLGYPFGGILYDLMGKSAPFIILSTLMFLSLGLQLLTMDLTVQPEVV 362
            .:|.|.|||.||.:.|||:.|.|||..||:.:||::||:.|:.|..|...|||..:...:.|.|.
 Frog   209 YQRGKAMGIALGGVVLGVVAGPPFGSALYEFVGKASPFLFLAALALLDGALQLFILTPKISPAVT 273

  Fly   363 VEDRPKWRSLLECKMILAIVLAIWFSTSTMAMLEPCLPIWLIQYLKPNKWQLGTVFIPDSVGYFV 427
            ..  |.:.|||:...||.....:..::..:.||||.||||::..:....||:|.||:|.|:.|.|
 Frog   274 TP--PSFCSLLKDPYILVAAGCLCIASMGIGMLEPTLPIWMLGSMCSPDWQIGLVFLPASLSYLV 336

  Fly   428 GTNFFGSIAYKYGQVKVSCISLLLVGVASILIPSATTVAQLLLPHFALGLGIGVIDAALVPLLAT 492
            .||.||.:::|:|:...|.:.::|:|:..:.:|.|..:..|:.|...:|:.:|::|::::|::..
 Frog   337 CTNVFGILSHKFGRWLCSLLGMVLLGICLLCMPLAFNILGLIAPIAGIGVSLGIVDSSIMPIMGY 401

  Fly   493 FVDATLAQEDQGEGSSSMSSYGTVYAIQQTSVSLAYCLAPLIGGELAQTFGFAWLMRIVGIFNMI 557
            .||.           ...|.||.||||...:.|..|.:.|...|.:|:..||..||.|:|:.|:|
 Frog   402 LVDL-----------RHSSVYGGVYAISDIAFSFGYAIGPSAAGAIAKAIGFPMLMVIIGVLNII 455

  Fly   558 YGPILVYLHQKYDPKALREQHNDMLLQSSGRGSRYKQLYNSMD 600
            |.|:.|.|..    ..::|:...:|...|...||..:...:.|
 Frog   456 YCPLCVLLRN----PPMKEERRALLNHESIVPSRLMKKSQTQD 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prtNP_001097887.1 MFS 212..565 CDD:119392 126/352 (36%)
MFS_1 212..532 CDD:284993 112/319 (35%)
LOC100496053XP_002932792.2 MFS_SLC18A1_2_VAT1_2 116..464 CDD:340942 130/383 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG59108
OrthoDB 1 1.010 - - D1371520at2759
OrthoFinder 1 1.000 - - FOG0000700
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23506
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.030

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