DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prt and LOC100487393

DIOPT Version :9

Sequence 1:NP_001097887.1 Gene:prt / 117368 FlyBaseID:FBgn0043005 Length:602 Species:Drosophila melanogaster
Sequence 2:XP_002932741.2 Gene:LOC100487393 / 100487393 -ID:- Length:497 Species:Xenopus tropicalis


Alignment Length:535 Identity:170/535 - (31%)
Similarity:271/535 - (50%) Gaps:100/535 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 NRCLIAVIVYLALLLDNMLLTVIVPILPDYLASLEADTSSAVVLSLEDTSSFSKLGYRSGESPGG 108
            :|.|:.|:|.:||||||||.||:|||:|.:|..                                
 Frog    16 SRQLVLVVVCVALLLDNMLFTVVVPIIPSFLYE-------------------------------- 48

  Fly   109 GHPQLYISKHPIPGKSMVNFTLLQLSTEATTTTTSIATTTNSPHNSTSMQSPPKLTVGQSGGTNV 173
                          |.:.|         |:.|||.:.:.. |.:||:.:.:              
 Frog    49 --------------KELKN---------ASVTTTELHSPI-SAYNSSVLFN-------------- 75

  Fly   174 TGIGHKSRNRKLASGH-PPTHDNSSNDNSNKELTLTQENGSIGLLLAMKALVQLIFNPIVGNASS 237
                        ||.| .||  ||||....|:.||..||..:|||.|.||:|||:.||:||..::
 Frog    76 ------------ASLHDSPT--NSSNKCEKKKHTLHSENVQVGLLFASKAIVQLLVNPLVGLITN 126

  Fly   238 KFGYRLPIVVGTFFLLLSSLVFTVGESYWALLVARAVQGVGSACINICGMSLVAQHYPEEARRSK 302
            :||:..|:..|...|.||:|:|....||..|.|||::||:||:..::.|:.|:|..|.::..|.:
 Frog   127 RFGFDAPLFAGFVILFLSTLMFAFSGSYALLFVARSIQGIGSSFSSVAGLGLLASVYMDDFERGQ 191

  Fly   303 VMGIILGSIALGVLLGYPFGGILYDLMGKSAPFIILSTLMFLSLGLQLLTMDLTVQPEVVVEDRP 367
            .|||.|..:|:|||.|.|||.::|:.:|:|:||::|:.|..|...|||..:..:..........|
 Frog   192 AMGIALTGLAVGVLAGAPFGSVMYEFVGRSSPFLVLAALALLDGALQLCILRPSKFSPTTAAPTP 256

  Fly   368 KWRSLLECKMILAIVLAIWFSTSTMAMLEPCLPIWLIQYLKPNKWQLGTVFIPDSVGYFVGTNFF 432
             :..||....||.....:|.:...:.||||.||||:::.:....||||..|:|.||.|.:.||.|
 Frog   257 -YHELLRDPYILVAAACLWIANMAVGMLEPTLPIWMMETMCSPDWQLGIAFLPASVAYLICTNLF 320

  Fly   433 GSIAYKYGQVKVSCISLLLVGVASILIPSATTVAQLLLPHFALGLGIGVIDAALVPLLATFVDAT 497
            |.:::|.|:...|.:.:::||...:.:|.|..:..|:.|:.|:|:.:|::|::::|::...||. 
 Frog   321 GILSHKMGRWLCSMLGMIVVGGGLLCVPLARNIYGLIGPNAAIGIALGMVDSSIMPIMGYLVDL- 384

  Fly   498 LAQEDQGEGSSSMSSYGTVYAIQQTSVSLAYCLAPLIGGELAQTFGFAWLMRIVGIFNMIYGPIL 562
                      ...|.||.:|||..|::.|.:.:.|.:.|.:|...||:|||.|:||.|:::.|:.
 Frog   385 ----------RHTSVYGGIYAICDTALCLGFAVGPSLAGVIASNIGFSWLMVIIGIINILFSPLC 439

  Fly   563 VYLHQKYDPKALREQ 577
            :.|.   :|.|..|:
 Frog   440 ILLR---NPPAKEEK 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prtNP_001097887.1 MFS 212..565 CDD:119392 124/352 (35%)
MFS_1 212..532 CDD:284993 111/319 (35%)
LOC100487393XP_002932741.2 MFS_SLC18A1_2_VAT1_2 31..443 CDD:340942 158/507 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D406900at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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