DRSC/TRiP Functional Genomics Resources

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Protein Alignment HBS1 and eEFSec

DIOPT Version :9

Sequence 1:NP_001286906.1 Gene:HBS1 / 117365 FlyBaseID:FBgn0042712 Length:670 Species:Drosophila melanogaster
Sequence 2:NP_611584.1 Gene:eEFSec / 37444 FlyBaseID:FBgn0034627 Length:511 Species:Drosophila melanogaster


Alignment Length:407 Identity:97/407 - (23%)
Similarity:168/407 - (41%) Gaps:69/407 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   252 VIGHVDAGKSTLMGHLLYDTGNVSQRVMHKHEQESKKLGKQSFMYAWVLDETGEERARGITMDVG 316
            ::||||:||:||                      :|.|...|...|:  |:..:...||||:|:|
  Fly     9 LLGHVDSGKTTL----------------------AKALSSISSTAAF--DKNPQSVERGITLDLG 49

  Fly   317 QSRI---------ETKTKIVTLLDAPGHKDFIPNMISGATQADVALLVVDATRGEFESGFELGGQ 372
            .|.:         :.:....|.:|.|||...|..:|.||...|:.||||||.:|:       ..|
  Fly    50 FSGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDAQKGK-------QTQ 107

  Fly   373 TREHAILVRSLGVNQLGVVINKLDTVGWSQ--DRFTEIVTKLKSFLKLAGFKDSDVSFTPCSGLT 435
            |.| .:::..|...:|.|||||:|....:|  .:..::..:|...|:...| ...|.....|.|.
  Fly   108 TAE-CLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAKTLEATTF-GGQVPICAVSALQ 170

  Fly   436 GENLTKKAQEPALTNWYSGRHLLDVI-ENFKIPERAIDRPLRMSVSDIYKGTGSGFCISGRVETG 499
            |.::.:               |.:|: |.:..|:|.:..||.|.|...:...|.|...:|.:..|
  Fly   171 GTHIAE---------------LREVLREAYFQPQRNLADPLFMYVDHCFGIKGQGTVCTGTLLQG 220

  Fly   500 VLCLNDKVLVGASREQAQVKSLTMNEFPQTCVFAGDQVSVTLPALDINNVTVGCIISDPQTPIPV 564
            .:.:|:.:.:.|..||.:|||:.|.....|....||::.:.:...:...:..| ||:.|....|:
  Fly   221 KVQVNNVIELPALGEQRKVKSIQMFRKNVTSASMGDRIGLCVTQFNAKLLERG-IITQPGYLKPI 284

  Fly   565 --------TTRFQARIIVFNVKVPITMGFPVLLHHQSLIEPAVVCKLTASIHKSTGEVVKKKPRC 621
                    ..|:...:|....|:.|::|...::.:.:|.........|..:.|....:...:|..
  Fly   285 YAVCLQFKPIRYYKEVIKSMRKMHISVGHNTVMANVTLFRDTDGTTSTFQLDKEYEYMEDVQPAE 349

  Fly   622 LGNNSCALVELETSRPI 638
            :.:|......|:...|:
  Fly   350 VQHNDVIYALLQFESPV 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HBS1NP_001286906.1 HBS1_N 83..145 CDD:286079
TEF1 241..669 CDD:227581 97/407 (24%)
EF1_alpha 249..468 CDD:206670 59/227 (26%)
HBS1-like_II 474..557 CDD:293912 22/82 (27%)
HBS1_C_III 561..669 CDD:294008 13/86 (15%)
eEFSecNP_611584.1 SelB_euk 5..192 CDD:206676 61/230 (27%)
SelB 6..467 CDD:225815 97/407 (24%)
SelB_II 196..278 CDD:293897 21/82 (26%)
eSelB_III 283..396 CDD:294009 13/84 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464656
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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