DRSC/TRiP Functional Genomics Resources

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Protein Alignment FASN2 and ltb4dh

DIOPT Version :9

Sequence 1:NP_001259986.1 Gene:FASN2 / 117361 FlyBaseID:FBgn0042627 Length:2410 Species:Drosophila melanogaster
Sequence 2:NP_001008100.1 Gene:ltb4dh / 493462 -ID:- Length:329 Species:Xenopus tropicalis


Alignment Length:382 Identity:78/382 - (20%)
Similarity:135/382 - (35%) Gaps:95/382 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1419 SWGSYRHLKMESRPPMLPVEQAYVNTLVKGDLSSLRWIESPRSSPIQSQLEPCTVYYAPLNFRDV 1483
            ||...||.:...:|....:                          |:::|       .||...:|
 Frog     6 SWTMVRHFEGAPQPEDFKL--------------------------IENEL-------PPLKDGEV 37

  Fly  1484 MLASGKLGVDALPGDLAYQDCVLGLEFAGRDSCGRRVMAMVTAKSLA--------------TNCL 1534
            :|.|..|.||  |....|....|.   .|....|.:|..::.:|:.|              |:.:
 Frog    38 LLESEFLSVD--PYMRPYSKMKLK---EGDVIMGSQVARVIESKNPAVPVGGYYVAFAGWTTHFI 97

  Fly  1535 ANRNLLWEVPSKWTMEQASTVPCVYA-----TVYYALVVRGQMKEGERILIHAGSGGVGQAAISV 1594
            ::...|..:||.|......::....|     |.|:.|:.....|||:.:|::|.:|.||.....:
 Frog    98 SDGQGLAPLPSSWPENLPKSLALGAAGMPGLTAYFGLLELCNPKEGDVVLVNAAAGAVGSLVGQI 162

  Fly  1595 ALAHGLTVFTTVGSKEKREFLLKRFPKLKAKNIG-----NSRDTSFEQLIMSETHGNGVELVLNS 1654
            |...|.......||.:|..||         |.||     |.:..|.....:.:....|.:....:
 Frog   163 AKIKGCKAVGCAGSDDKVGFL---------KEIGFDEAFNYKTVSSLAEALKKASPEGYDCYFEN 218

  Fly  1655 LSEEKLQASIRCLALNGRFLEIGKFDLSNNTP------LGMSVFLKNTSFHGILL----DSVMEG 1709
            :..:....:::.:...||....|...|.|::.      :...:..|.....|.|:    |...||
 Frog   219 VGGKFADTALQQMKDFGRIAVCGAISLYNDSVPSTGPYIQPYILFKQLRMEGFLVTRWQDRYPEG 283

  Fly  1710 EEEM--QLMVAKL-VAEGIKSGAVQPLPTTVFAEQEIEKAFRFMASGKHIGKVVIKV 1763
            ::::  .::..|| ..|.|.:|.           :.:...|..|..|::|||.:|||
 Frog   284 QKQLLQWIIEGKLKYHEHITNGF-----------ENMPAGFMGMLKGENIGKAIIKV 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FASN2NP_001259986.1 PksD 15..1043 CDD:225858
PKS 18..423 CDD:238429
KAsynt_C_assoc 381..498 CDD:292814
Acyl_transf_1 518..835 CDD:298668
hot_dog 875..1072 CDD:294345
NADB_Rossmann 1263..>1429 CDD:304358 4/9 (44%)
PKS_ER 1471..1761 CDD:214840 68/326 (21%)
enoyl_red 1473..1761 CDD:176179 68/324 (21%)
KR_1_FAS_SDR_x <1780..2018 CDD:187657
PKS_PP 2031..>2083 CDD:214834
Abhydrolase 2159..2408 CDD:304388
ltb4dhNP_001008100.1 leukotriene_B4_DH_like 2..329 CDD:176254 76/380 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1925
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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