DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gr28a and egl-47

DIOPT Version :9

Sequence 1:NP_523504.2 Gene:Gr28a / 117348 FlyBaseID:FBgn0041247 Length:450 Species:Drosophila melanogaster
Sequence 2:NP_001023728.1 Gene:egl-47 / 183687 WormBaseID:WBGene00001211 Length:522 Species:Caenorhabditis elegans


Alignment Length:383 Identity:81/383 - (21%)
Similarity:154/383 - (40%) Gaps:94/383 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 VRLGMKLDY--RRILLSSFLISLGMLLFNVIYLCV-SYSLLVSATISPSFVTFTTFALPHINISL 189
            ::|.:.::|  ..:||:||||.:.   |.|:.|.. .:.|:.:.|:: |.:|.|.   |.||:.:
 Worm   141 IKLILYVNYIVLAVLLNSFLIKMN---FKVLMLYKHKFGLMHTGTVA-SMITATK---PVINVFV 198

  Fly   190 MVF---------KFLCTTDLA----RSRF-----------------------SMLNEILQ----- 213
            :|.         :.|.|.|:.    ||.|                       :::.::::     
 Worm   199 IVLSAIKFKSHQRLLKTIDMVDVCFRSAFGVSPPLRIYKFVFFFTLLIIFFSALILKVVEFVGTG 263

  Fly   214 DILDAHIEQLSALELSPMHSVVN--HRRYSHRLRNLISTPMKRYSVTSVIRLNPE-----YAIKQ 271
            :|...||....:..|.|:.|:.|  ...|.| |.|::   ::.|..|.:..:|.|     :::|.
 Worm   264 EIFGEHILTDCSFILVPVLSLWNIIPLLYYH-LYNIL---VRFYCRTLIKSMNREHKKRHFSLKF 324

  Fly   272 VSNIHNLLCDICQTIEEYFTYPLLGIIAISFLFILFDDFYIL------------EAILNPK---- 320
            .......:.::.:.:.:.|...||..:|.|.|.:....:::.            |.:.|||    
 Worm   325 YYEQFTRITNVQEAVGDVFNPLLLFSLAWSLLVLCLTLYFLSEPTSTLLVPITPEQVTNPKIREK 389

  Fly   321 -RLDVFEADEFFAFFLMQLIWYIVIIVLIVEGSSRTILHSSYTAAIVHKILNITDDPELRDRLFR 384
             .:.|.....:.|:.::..|.:|:||      .|..::.:..|..||:.:|.|..|.......|:
 Worm   390 LNITVHVKICWAAYQVVMAILHIIII------CSTGMMTNETTRQIVNAVLRIVPDANADLDRFQ 448

  Fly   385 LSLQLSHRKVLF----TAAGLFRLDRTLIFTITGAATCYLIILIQFRFTHHMDDTSSN 438
            :|..:......|    |....|.|:||..||:......|.::|.:|:     ||...|
 Worm   449 ISCFVHKMTTQFMWGMTVWRAFPLERTTFFTLISVIVTYSLLLFRFK-----DDMVQN 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gr28aNP_523504.2 7tm_7 22..430 CDD:285581 78/373 (21%)
egl-47NP_001023728.1 7tm_7 110..495 CDD:303125 77/370 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR21143
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.