DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gr98b and lite-1

DIOPT Version :9

Sequence 1:NP_733213.1 Gene:Gr98b / 117327 FlyBaseID:FBgn0046887 Length:403 Species:Drosophila melanogaster
Sequence 2:NP_509043.3 Gene:lite-1 / 180894 WormBaseID:WBGene00001803 Length:439 Species:Caenorhabditis elegans


Alignment Length:468 Identity:82/468 - (17%)
Similarity:164/468 - (35%) Gaps:147/468 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 PPPQS--------FGHTPHR----------------RLRWYL--MTGY-VFYATAIL-------- 55
            |||.|        |.||...                |.:|.:  .|.| ::|...||        
 Worm     2 PPPSSHSNIFHSTFKHTVKETMANAKKTMIAKILSSRNKWAICDRTLYPIYYLLLILGLNQSIRP 66

  Fly    56 --ATVF-IVSY-------------FNIIAIDEEVLEYNVSDFTRVMGNIQKSLYSIMAIANHLNM 104
              :.:| |.|:             ||.:.:.......|:.:|   ..|.:    |::.:.|.|.|
 Worm    67 NNSLLFRIYSWLVFCLLLFTTLRKFNQVGVRPNGTRENLQEF---FANPR----SMITLCNALIM 124

  Fly   105 L-----------INYRRLGGIYKDIADLEMDMDEASQCFGGQRQRFSFRFRMALCVGVWMILMVG 158
            |           :..:||..: |.:....:::....    .:|::|.....:|:..|:..:.|..
 Worm   125 LSGLLASLQLYTLGAKRLKPL-KILCQFSLNVRTKQ----AERRQFMINTFLAVFSGLLALTMAA 184

  Fly   159 SMPRLTMTAMGPFVSTL----LKILTEFVMIMQQLKSLEYCVFV---------LIIYELVLRLRR 210
            :   ..|:..|..:..:    |...|.|.:::.     .|.:||         ::.|:....:||
 Worm   185 T---YAMSKWGYILYIVGTPNLDTETIFCVLLD-----SYALFVSRAAISALAILFYQHCSVIRR 241

  Fly   211 TLSQLQEEFQDCEQ------QDMLQAL--CVALKRNQLLLGRIWRLEGDVGSYFTPTMLLLFLYN 267
            ::..|..|....||      :..||.:  |      |:...||:..:..:..|::   .:||...
 Worm   242 SIKHLINEMVPAEQDECPLPESSLQKIHDC------QISYQRIFNGKAVIEEYYS---FVLFYSY 297

  Fly   268 GLTI------------LHMVNWAYINKFLYDSCCQYERFLVCSTLLVNLL--LPCLL----SQRC 314
            |:.|            ...:.|:.:...:         ..:.:.:||.||  ||..:    ..|.
 Worm   298 GVCIPIFCFLMFVGMSAQSICWSEVVSIV---------IWIVNAILVLLLFSLPAFMINEDGDRL 353

  Fly   315 I-NAYNCFPRILHKIRCTSADPNFAMLTRGLREYSLQMEHLKLRFTCGGLFDINLKYFGGLLVTI 378
            : :::..:....|:.|      :..:|:: :..::.|:...||..:....|.::......|...|
 Worm   354 VASSFRMYHETFHEER------DLTVLSQ-MTFFTFQIHSTKLTLSACNYFYMDRSILLSLFSAI 411

  Fly   379 FGYIIILIQFKVQ 391
            ..|.:||.:|.::
 Worm   412 LTYFLILWEFDIK 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gr98bNP_733213.1 7tm_7 13..391 CDD:285581 82/466 (18%)
lite-1NP_509043.3 7tm_7 75..425 CDD:285581 66/395 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159984
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR21143
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.030

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