DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dsp1 and HMGB4

DIOPT Version :9

Sequence 1:NP_001138203.1 Gene:Dsp1 / 117294 FlyBaseID:FBgn0278608 Length:397 Species:Drosophila melanogaster
Sequence 2:NP_001031364.2 Gene:HMGB4 / 816263 AraportID:AT2G17560 Length:138 Species:Arabidopsis thaliana


Alignment Length:130 Identity:39/130 - (30%)
Similarity:61/130 - (46%) Gaps:14/130 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   262 RGKK--RKQIKDPNAPKRSLSAFFWFCNDERNKVKALNP-EFGVGDIAKELGRKWSDVDPEVKQK 323
            ||:|  :|..||||.|||..||||.|..|.|.:....|| ...|..:.|..|.:|..:..|.|..
plant    20 RGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAP 84

  Fly   324 YESMAERDKARYEREMTEYKTSGKIAMSAPSMQASMQAQAQKAALLAAAAQQQHQQLEEQHDDDD 388
            |.:.||..|..|.:.:.:|    .:.:::.:.:....:...|:.:..|.:       ||:.:|||
plant    85 YVAKAESRKTEYIKNVQQY----NLKLASGTNREEDDSDKSKSEVDEAVS-------EEEAEDDD 138

  Fly   389  388
            plant   139  138

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dsp1NP_001138203.1 HMG-box 182..252 CDD:294061
HMGB-UBF_HMG-box 275..339 CDD:238686 23/64 (36%)
HMGB4NP_001031364.2 HMG_box 35..103 CDD:278906 23/67 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000133
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100324
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X111
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.710

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