Protein Alignment Dsp1 and hmgb3b

DIOPT Version :10

• Sequence 1: NP_001138203.1
• Gene: Dsp1 / 117294
• FlyBaseID: FBgn0278608
• Length: 397
• Species: Drosophila melanogaster
• Sequence 2: NP_001017769.1
• Gene: hmgb3b / 550466
• ZFINID: ZDB-GENE-050417-290
• Length: 198
• Species: Danio rerio
• Alignment Length: 218
• Identity: 100/218 - (45%)
• Similarity: 136/218 - (62%)
• Gaps: 23/218 - (10%)

  Fly   178 KAD-AKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKD 241
            |.| .||:|:|:||||||:||||||.||:|..||.|:|||:||:||||||..|||.:|.::|::|
Zfish     3 KGDPGKPKGKMSAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFEDLAKQD 67

  Fly   242 KQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDIA 306
            |.||:.||.:|.|.|       |.|||.||||||:|..|.||.||.::|..:||.||..|:||:|
Zfish    68 KARYDQEMMHYNPGK-------KGRKQKKDPNAPRRPPSGFFLFCAEQRPIIKAQNPSLGIGDVA 125

  Fly   307 KELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKIAMSAPSMQASMQAQAQKAALLAA 371
            |:||..|:::....||.:.|.|::.|.:|:::|..|:..|    |..|..|..:.:
Zfish   126 KKLGGMWNNLSDSEKQPFLSNADKLKDKYQKDMAFYRKKG----SGGSSSAKSEPK--------- 177

  Fly   372 AAQQQHQQLEEQHDDDDGDGDDD 394
              .......||:.||||.|.|||
Zfish   178 --DDDDDDDEEEEDDDDDDEDDD 198

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Dsp1	NP_001138203.1	HMG-box_HMGB_rpt1	182..250	CDD:438794	43/67 (64%)
		HMG-box_NHP6-like	262..342	CDD:438792	36/79 (46%)
hmgb3b	NP_001017769.1	HMG-box_HMGB_rpt1	8..76	CDD:438794	43/67 (64%)
		HMG-box_HMGB_rpt2	92..162	CDD:438795	29/69 (42%)