Protein Alignment Dsp1 and hmgb2b

DIOPT Version :10

• Sequence 1: NP_001138203.1
• Gene: Dsp1 / 117294
• FlyBaseID: FBgn0278608
• Length: 397
• Species: Drosophila melanogaster
• Sequence 2: NP_001004674.1
• Gene: hmgb2b / 447936
• ZFINID: ZDB-GENE-040912-122
• Length: 214
• Species: Danio rerio
• Alignment Length: 221
• Identity: 92/221 - (41%)
• Similarity: 139/221 - (62%)
• Gaps: 11/221 - (4%)

  Fly   177 VKADA-KPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEK 240
            ||.|. ||:|:.:|||:||||||:|||:|.||..|.|:|||:||:||||::...:|.:|.:||:.
Zfish     2 VKGDVNKPKGKTSAYAFFVQTCRDEHKRKSPDVPVNFSEFSKKCSERWKSLNASDKVKFEDMAKA 66

  Fly   241 DKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFGVGDI 305
            ||.||:.||:.||||||.    ||..::.||||||||..||||.||::.|..||:.:|...:|:|
Zfish    67 DKVRYDREMKTYVPPKGV----GKTGRKKKDPNAPKRPPSAFFVFCSEYRPTVKSEHPNLTIGEI 127

  Fly   306 AKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKIAMSAPSMQASMQAQAQKAALLA 370
            ||:||..||....:.:..:|..|.:.:.:||:|:..|:..|..:...|........::|
Zfish   128 AKKLGELWSKQSSKDRAPFEQKAGKLREKYEKEVAAYRAGGGASKRGPGRPTGSVKKSQ------ 186

  Fly   371 AAAQQQHQQLEEQHDDDDGDGDDDEN 396
            |.|.....:.|::.|::|.:.::||:
Zfish   187 AEADDDDDEDEDEEDEEDDEEEEDED 212

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Dsp1	NP_001138203.1	HMG-box_HMGB_rpt1	182..250	CDD:438794	38/67 (57%)
		HMG-box_NHP6-like	262..342	CDD:438792	33/79 (42%)
hmgb2b	NP_001004674.1	HMG-box_HMGB_rpt1	8..76	CDD:438794	38/67 (57%)
		HMG-box_HMGB_rpt2	95..165	CDD:438795	28/69 (41%)